Candidatus Thiocaldithrix dubininis: QJT80_03405
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Entry
QJT80_03405 CDS
T09759
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJT80_03405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdu03019
]
QJT80_03405
03009 Ribosome biogenesis [BR:
tdu03009
]
QJT80_03405
Enzymes [BR:
tdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJT80_03405
Messenger RNA biogenesis [BR:
tdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJT80_03405
Ribosome biogenesis [BR:
tdu03009
]
Prokaryotic type
rRNA helicases
QJT80_03405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
AAA_22
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WGZ91525
UniProt:
A0AA95H8T1
LinkDB
All DBs
Position
705338..707320
Genome browser
AA seq
660 aa
AA seq
DB search
MTSEITLPAFTELGLATPILHALQTIGYETPSAIQAETIPYLLAGRDVLGQAQTGTGKTA
AFALPLLSRLDLSKTNTQILVLAPTRELAIQVAEAFQKYAMNLSNFHVMPIYGGQDYRTQ
FRQLERGVQVVVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIEDIEWIMEQTP
SNRQIALFSATMPPAIHRIAQSYLNNPAEVKIQVKTTTAETIRQRYWLVSGLHKLDALTR
ILEAEPFDACIIFVRTKTETVELAEKLQARGYSATALNGDIPQNVRERTVEQLKAGKIDI
LIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGDAILFVSPRERYLLR
AIERATNQRIDLMELPSTDIINNKRIEQFNQRISDTIAANGLDFFRQLMENYEREHDVPA
LEIAAALARLLQGDEPMLLEEKKAHPAYNPAAERERDDKRKSNKKKSNAVNFNEDDEISM
ERFRVAVGRAHGVKPGNIVGAIANEAGLDSRFIGYIDIQDDYSLVDLPAGMPADILSELK
KTWVSGRQLNIEPAGEAAGDYSPSRRSGNKRRESDSGDRRRRSNSDAPRRRSSEGGRGGE
RRSEGRSERSGERRSAGGDNRSTERRPRTDKPANTGDKAPRRSTSSDKRGKDKPSTKRAD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgacctctgaaattaccttgcctgcgttcactgaactcggtcttgcaacgcctattctg
cacgccttacaaacgattggttatgaaacaccatcagcgattcaagctgaaacgattcct
tatttattggctggtcgcgatgtgctgggtcaagcccagaccggtacaggtaaaactgct
gcctttgccctgccgttattgtcacgtttagatttaagtaaaaccaatacccaaatttta
gtgcttgcgccgactcgggaattagccattcaagttgctgaggcatttcagaagtatgcc
atgaatttgtctaacttccatgttatgccgatttatggcgggcaagattatcgcacgcaa
ttccgtcaattagagcgtggtgtgcaagttgtggtgggtacgccggggcgggtgatggat
catatgcgccgtggcacgctgaagttagatagcttacaagccttggtattggatgaagcc
gatgaaatgttacgcatgggctttattgaagatattgaatggattatggagcaaaccccg
tccaatcggcagattgctttattctctgcgactatgccgcctgcgattcatcgtattgcg
caaagttatttgaataatccggctgaagtcaaaatccaagttaaaaccactacagcggaa
acgattcgccagcgttattggttggtaagcgggttgcataaattggatgcgctcactcga
attttggaagccgagccatttgatgcctgcattattttcgtgcgtactaaaaccgagacg
gttgaattagccgagaagttacaagcgcggggctatagcgcgaccgctttaaacggagat
attccgcaaaatgtgcgcgagcgcacggttgaacagcttaaagcgggcaaaattgatatt
ttgattgcgactgatgtggccgcgcgtggtttagacgtggaacgtattagtcacgttatt
aactacgatattccgacagataccgaatcttacgtacaccgtattgggcggacgggacgt
gccggacgttcaggcgatgctattttatttgtgtcaccccgtgaacgttacttgttacgt
gcgattgaacgcgccaccaatcaacgcattgatttgatggaattgccgtcgacggatatt
attaataacaaacgaattgagcaattcaatcaacgtattagcgatactattgccgcgaat
ggcttggatttcttccgtcaattgatggagaactatgaacgcgaacatgatgtacctgcg
ttagaaattgccgccgctttagcgcgtttattgcaaggcgatgagccaatgctgctggag
gagaagaaagcgcatccggcttataatcctgcggcagaacgcgagcgtgacgataagcgt
aagagcaacaaaaagaaaagcaatgcggttaatttcaatgaagatgatgaaatttcaatg
gagcgtttccgcgttgcggttgggcgggcgcacggggtaaaaccgggtaatatcgtggga
gcaattgccaatgaagcaggtttagatagccgttttattggttatattgatattcaagat
gattacagtttggtggatttaccagcgggtatgccagcggatattttgtctgaattgaaa
aagacgtgggtatccggtcgccaattgaatatcgaacccgcaggggaagcggctggcgat
tattcaccaagtcgtcgcagtggcaacaaacgccgtgaaagtgatagtggtgatcgccgc
cgccgttcaaatagtgatgcaccacgtcgtcgttcctctgaaggtgggcgtggcggagag
cgtcgtagcgaaggtcgttctgagcgtagcggtgaacgccgtagtgcaggcggtgataat
cgcagtactgagcgtcgtccacgtacagataaaccagctaacacgggtgataaagcgccg
cgtcgttcaaccagcagtgataaacgtggcaaagacaaacccagcacaaaacgtgctgac
taa
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