Candidatus Thiocaldithrix dubininis: QJT80_05540
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Entry
QJT80_05540 CDS
T09759
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03030
DNA replication
tdu03430
Mismatch repair
tdu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QJT80_05540 (dnaE)
03430 Mismatch repair
QJT80_05540 (dnaE)
03440 Homologous recombination
QJT80_05540 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdu03032
]
QJT80_05540 (dnaE)
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_05540 (dnaE)
Enzymes [BR:
tdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QJT80_05540 (dnaE)
DNA replication proteins [BR:
tdu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QJT80_05540 (dnaE)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QJT80_05540 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
hNIFK_binding
tRNA_anti_2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WGZ91944
UniProt:
A0AA95HB28
LinkDB
All DBs
Position
1153418..1156927
Genome browser
AA seq
1169 aa
AA seq
DB search
MTPFVHLRLHTEYSLVDSTIRIKPLMKSVEKLGMPAVAITDLNNFFGLVKFYKAANGAGI
KPIFGMHVLLKDEQSEQVFPLLLLCQTNTGYRNLTRLISRAYLQGQVLGVPYVQHAWLKE
FSDGVIMLSGGREGDVGQALLAGNQDLAQRRLQEWLAVFGDRYYLELQRTGREGEEDYIQ
AAVELALALAVPVVATNDVRFVQSADFDAHEARVCINSGHVLADPKRPRLYSAQQYLRSP
AEMQALFADIPSALENTVEIAKRCNVSLTLGKNYLPQFPIPDGMTEAEYFCKVSQDGLEE
RLDFLFTDTPRGTPAFLERRKPYDERLTIELDVINKMGFPGYFLIVADFIQWAKDNGIPV
GPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYV
AQTYGRNQVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRVAKLIPFVLGITLEDALGRS
KKAQDDSERVSPELCELYEKDEEVKALLDLALSLEGLSRNTGKHAGGVLISPSDLTDFTP
ILCEENGEGLVSQFDKNDVEEIGLVKFDFLGLRNLTIIDWALQTINRQQAAKGLPLVDIN
RIPLDDKPSYDLLKAQKTTAVFQLESRGMKDLIRRLQPDVFEDIIALVALFRPGPLQSGM
VDDFINRKKGIAAIEYPHPSLEQILKPTYGVIVYQEQVMQIAQVLASYTLGGADMLRRAM
GKKKPEEMAKQRSIFMEGARNNNIDDNQSGYIFDLMEKFAEYGFNKSHSAAYALVAFQTA
WLKAHYPAAFMAAVLSADMDNTDKVVTLLDDCRQLNLTILPPDINRSDFQFTVDEQNRII
YGLGALKGAGEAALSVLLQERQQNGAFKSLTDLCKRANSQKVNKRVLETLIKSGAFDSLG
GTRRAMLAFLPEAMRMAEQHHRDQLKGQTDLFGGMFGDALGASNESIMSDLAEFPEKERL
QLEKETLGLYLTGHPLDEYKQEIEGLPHRMPLVDLAEDEHTKYKKQSVMLAGLVSSIRTQ
NTDNGKRAFVQLDDNTAYYEALIFTDTYTQYAELLEKDTCVVIEGVLDTNFSGKTRLKVE
KIHTMQSVRENFLRRVYFKLKHDNQTCFEQLKPYLMQSDNPKHQIIIDYQGAQAKAELRL
GSQWQVMLGDESLKAMREILEKDQLRLVF
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaccccattcgtccatttgcgcttgcatactgaatattcgttagttgatagcaccatt
cgcattaagccattaatgaaatcggtggaaaaattgggtatgcctgcggtggcgattacc
gatctgaataatttttttggtttggtgaagttttataaagccgctaatggggcagggatt
aagccgattttcggtatgcatgttttgctgaaagatgagcaaagcgagcaggtgtttcca
ttattattgctgtgccaaacgaatacaggctaccgcaatctgacccgcttaatttcccgt
gcgtatttgcaagggcaagtattaggcgtaccgtatgtgcaacacgcttggctgaaagaa
ttcagcgacggcgtgattatgctatcgggtgggcgtgaaggcgacgtggggcaagcgtta
ttagcgggtaatcaagatttagctcagcggcgcttgcaagaatggttggcggtatttggc
gaccgttattacttggaattgcaacgcaccggacgtgagggcgaagaggattatatccaa
gcagcggtggaattagcgctggcgttggctgtgccggtggtagcaaccaatgatgtgcgg
tttgtacaatccgccgattttgacgcacacgaagcccgcgtatgtattaatagtgggcat
gtattagctgatccaaaacgcccgcgtttatacagtgcgcagcaatatttacgttctcca
gcggaaatgcaggcgttatttgcggatattccgtccgcgctggaaaacacagtggaaatt
gccaagcgttgtaatgtgtcgttgacgttgggtaaaaactatttgccgcaatttccgatt
ccagacggtatgactgaagcggagtatttctgcaaggtgagccaagacggtttggaagaa
cgtttggattttctatttacggatacgccacgcggcacgccagcattcttagaacggcgt
aagccctatgatgagcgtcttaccattgaactagacgtgattaataaaatgggttttccc
ggttacttcttaatcgtggccgacttcattcaatgggcaaaagataatggcattcccgtt
ggtccggggcgcggttcgggtgcaggttcattagtggcttatgccttaaaaattaccgat
ttagaccccttagcttacgatttattatttgaacgctttctcaaccccgaacgcgtatct
atgccggatttcgatattgatttctgcatggataatcgtgacaaagtgattgattatgtg
gcgcaaacttacgggcgtaatcaggtttcacaaatcattacttacggctcaatggcggct
aaagcagtagtacgcgatgttgggcgtgtgttggggcatccgtatggctttgtggatcgg
gtcgctaaactgattccctttgtcttagggattaccttagaagacgcgctagggcgttcc
aaaaaagcacaagatgattccgaacgcgtctcacccgaattatgcgaactgtatgaaaaa
gacgaagaagtcaaagccttattagacttagccttgtctttagaaggcttatcccgcaat
acaggtaaacacgcaggcggggtattgatttcgccttcggatttaaccgatttcaccccc
attttatgcgaagagaacggcgaaggcttggtttcacagtttgataaaaacgatgtggaa
gaaattggtctggttaaattcgactttttaggcttgcgtaacctaaccattattgattgg
gcattgcaaaccattaatcgccaacaagccgctaaaggcttacccctagtcgacatcaac
cgtattccgctcgacgataaacccagctacgacttactcaaagcgcagaaaaccaccgct
gtattccaactggaatcacgcggcatgaaagacttaatccgccgcctacaaccggacgta
tttgaagatattatcgcgctggtggctttattccgtccgggtcctttgcaatccggcatg
gtcgacgattttattaatcgtaaaaaaggcattgccgcgattgaatacccgcatcctagc
cttgagcaaattcttaaacccacttacggcgtgattgtttaccaagaacaggttatgcaa
attgcgcaagtgctggcgagttatacgcttggcggtgcggatatgttacgccgcgccatg
ggtaagaaaaaacccgaagaaatggctaagcaacgctcaatttttatggaaggtgcgcgt
aataacaatatcgacgataatcaatcaggttatatctttgatttaatggagaagtttgcg
gaatacggcttcaataagtcacattctgccgcttatgcgttagtggccttccaaacggct
tggttaaaagcccattatccggcggcgtttatggcagcggttttatcggcggatatggat
aacaccgataaagtggtaaccttattagatgattgccgccaattaaatcttactatttta
ccaccggatattaatcgctcggattttcaatttacggtcgacgagcaaaatcgtattatt
tacggattaggtgcattaaaaggcgcgggtgaagcagcgttaagtgtgttattgcaagaa
cgccagcaaaatggtgcgtttaaatcgttaacagatttatgcaaacgggcgaattcacaa
aaggtgaataagcgcgtgttagaaacgcttattaaatcgggggcgtttgattcattaggc
gggacgcggcgcgccatgttggcatttttgccagaagccatgcgcatggcagaacaacat
caccgcgatcaattaaaagggcaaactgatttatttggcggtatgtttggcgatgcgctg
ggtgcatcaaacgaaagtattatgtcggatttagccgaatttcccgaaaaagaacgcctg
caattagaaaaagaaacgctaggtttatatttaacgggacatcctttagacgaatataaa
caagaaatcgaagggctgccgcatcgtatgccactagtggatttagccgaggacgagcat
accaagtataaaaagcaatccgtcatgctagccggattagtatcgagtattcgcacacaa
aataccgataatggcaaacgggcttttgtgcaattagatgacaatactgcgtattatgaa
gccttaatttttacagatacctatacacaatatgccgaacttttagaaaaagatacgtgt
gtagtgattgaaggggtattggataccaatttttcgggtaaaacacgcttaaaagttgaa
aaaattcatactatgcaatctgtacgtgaaaactttttacgccgtgtttattttaagctg
aagcatgataaccaaacttgttttgagcagcttaaaccgtatttgatgcaaagtgataat
ccgaagcatcaaattattattgattaccaaggggcgcaagccaaagctgaattacgatta
ggcagtcaatggcaagttatgctcggtgatgagtcattgaaagccatgcgagaaatttta
gaaaaagatcagcttagattggtgttttaa
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