Candidatus Thiocaldithrix dubininis: QJT80_06140
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Entry
QJT80_06140 CDS
T09759
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJT80_06140 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdu03019
]
QJT80_06140 (rnr)
03016 Transfer RNA biogenesis [BR:
tdu03016
]
QJT80_06140 (rnr)
Enzymes [BR:
tdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QJT80_06140 (rnr)
Messenger RNA biogenesis [BR:
tdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QJT80_06140 (rnr)
Transfer RNA biogenesis [BR:
tdu03016
]
Prokaryotic type
tRNA degradation factors
QJT80_06140 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
CSD
OB_Dis3
RNase_II_C_S1
FNIP_N
Motif
Other DBs
NCBI-ProteinID:
WGZ92057
UniProt:
A0AA95KLG7
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All DBs
Position
1279826..1282273
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AA seq
815 aa
AA seq
DB search
MKLKDPHFQREADKYDKPIPSREVILQILSDRGEPLDFASLADALKLTDEVDLDALKKRL
RAMERDGQLLYNRKRQYVPVGRTDLIAGRVIGHPDGFGFLQPEDGSPDLFLHAKQMRTLM
HGDRALVSVRGLDHKGRREGALVEVLERGTTQVVGRYFVENGIGFVAPDNSRITQDILIP
TDAVGEAKPGQIVVAAIVEQPSKLAQPRGKIVEVLGDHMAPGMEINVAIRSHELPYEWPQ
AVLEAADKFTFEVAAKDKKGRVDLRKIPLVTIDGEDAKDFDDAVYCERDEKNNWRLLVAI
ADVSHYVQPNGAIDREAALRGTSVYFPGKVIPMLPEILSNGLCSLNPKVDRLCMVCDIRL
GSRGKLLSYEFVEGIMHSAARLTYTKMAAMVVDGDTALRSEYPSELVTHLDDLYALYKVL
RKARDRRGAIDFETAETKIVFDENRKIEAIVPVERNDAHKIIEEYMILANVCAAKFLSKH
KMPALHRSHAGPTPEKLVTVRQFLSGVGLTLEGGDDPTPTDYAKLLNSIQERPDKRLIQT
VLLRSLSQAVYSPDVIGHFGLAHDYYAHFTSPIRRYPDLLVHRAIRHVLRGGKPSDFLYT
HADMVTLGEHCSMTERRADDATRDVSAWLKTEYMQDHVGESFDGIISGVTGFGLFVELDK
VYVEGLIHVTALTNDYYHFDPVRHQLKGENSGRVYRLGDKLRVMVARVDLDERKIDFVLA
DSDKPTTAKRKPKPKTSANPSAAAKPANKARQSGEKPPKKPKRKTTPAVKPQAEQTQRPA
KAAKPKSSKASNSATTPKSKAKKSTKKSNARKTQD
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcttaaagacccacatttccagcgtgaagccgataaatacgataaaccgattcca
agtcgcgaagtaattttgcaaatcttaagtgatcggggcgagccgttggattttgctagt
ttagccgatgcattgaaattaaccgatgaggtggatttggatgcgttaaagaaacgttta
cgtgcgatggaacgcgatggacaactgttatacaaccgcaagcgccaatatgtgccggtg
gggcggactgatttaattgcaggtcgggtgattgggcatcccgatggttttggtttttta
cagcctgaagacggcagccccgatttattcttacacgccaagcaaatgcgtaccttaatg
catggcgaccgtgccttggtgagtgtgcgcggtttagatcataaagggcggcgcgaaggc
gcattggttgaggtattggagcgcgggacaacccaagtagtggggcgttatttcgtggaa
aacgggattggctttgttgcgcccgataattcacgcattacccaagatattttgattccc
accgatgcagtaggtgaagccaagccggggcagattgtggtggcggccattgttgaacag
ccgtctaaacttgcccagccacgcggtaagattgtggaagtgctaggcgatcacatggcg
ccgggtatggaaattaatgtagcgattcgtagtcatgaattgccgtatgaatggccgcaa
gcggtgttagaggcggcggataaatttacctttgaggtggcagctaaagataaaaaaggg
cgggtagatttacgtaaaattccgctggttaccattgatggcgaagacgcgaaagatttc
gatgatgcggtgtattgtgagcgcgacgaaaaaaataattggcgtttattagtcgctatt
gcagacgtatcgcattatgtgcagccgaatggcgcgattgatcgggaagctgccttacgc
ggcacatcggtatattttccgggcaaggttatcccaatgttgccggaaattctgtcaaac
ggtttatgttcgctcaatcccaaggtcgaccgtttgtgtatggtctgcgatatacgccta
ggttcacgcggcaaattgctgagttatgaatttgtggaaggtattatgcattccgccgcc
cgtttaacatataccaaaatggcggctatggtagtagacggcgatacggcactgcgctct
gaatacccaagcgaacttgtgacgcatttagatgatttgtatgccttgtataaggtattg
cgtaaagcgcgggatcggcgtggggctattgattttgaaaccgcagaaaccaaaatcgta
tttgacgaaaatcgtaaaatcgaagcgattgtgccagttgaacgcaatgatgcgcataag
atcattgaagaatacatgattttagccaatgtgtgtgcggcgaaatttttaagtaagcat
aaaatgcctgctttgcaccgttcgcacgcagggccaaccccggaaaagttagtaacagta
cgccagttcttaagcggtgtgggtttaacgttagaaggcggtgatgatccaacgccgacg
gattatgcaaaattattaaatagcatacaggagcgtcctgataagcgtttgattcaaacc
gtattgctgcgttccttatcacaggcggtatatagcccggatgtgattgggcattttggt
ttagcgcatgattattacgcgcattttacttcaccgattcggcgttaccctgatttattg
gtgcatcgtgcaatccgccatgtgttgcggggcggtaaacctagcgattttctgtataca
catgccgatatggtgacgttaggcgaacattgttctatgactgaacgccgcgccgacgat
gctacccgcgatgtaagcgcatggctgaaaaccgaatacatgcaagatcatgtgggtgaa
agctttgatggcattatttccggtgtaacaggctttggcttgtttgtggaattggataaa
gtgtatgtggaaggcttaattcatgtaacggctttaaccaacgactactaccattttgat
ccggtgcggcatcaactcaaaggtgaaaactcgggacgtgtatatcgcttaggcgataag
ctacgcgtgatggtagctcgggtggatttagacgagcgcaaaatagattttgtattggct
gatagtgataaacccactacggctaaacgtaagcccaagcctaaaaccagtgctaatcct
tcggctgcagctaaaccagctaataaagcacgccaaagtggtgaaaagccaccgaagaag
ccaaagcgtaaaacgacaccggctgttaagccgcaagcggaacaaacccaacgtccggca
aaagcggctaagcccaaaagtagcaaagcctcaaacagcgcgaccacgccgaaatctaag
gcaaaaaaatcgactaaaaaatccaatgcacggaagactcaagattaa
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