Candidatus Thiocaldithrix dubininis: QJT80_06495
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Entry
QJT80_06495 CDS
T09759
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QJT80_06495 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_06495 (recB)
Enzymes [BR:
tdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QJT80_06495 (recB)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QJT80_06495 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_22
AAA_11
Sod_Fe_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
WGZ92125
UniProt:
A0AA95H9Y9
LinkDB
All DBs
Position
1352567..1356115
Genome browser
AA seq
1182 aa
AA seq
DB search
MKTLNAKTVALDGSNLIEASAGTGKTWTISWLYLRLIAHEDLRVNQMLVVTYTEAATAEL
RDRIRKRLAEALAFLEDQLTEESYAELLQATELDKAILIRRLQRALVSFDEAAVYTIHGF
CKRVLTDNAFEAHLRFESELVANEDQLLTELSDQFWYQYFHKPDALHSQLLQTYKLTPDR
LLKDVRSFIGKPYLTEPVLGVNPDNFQTLKQGLEQQLSVCGQTWAKHKTAIQQLLWQALQ
DKVLNANVYKKTKLLDWYNALDSLFVDYILSPMAVDALDKLSADCMAGKLNKNKVAPKHV
FFTQVQAAAKVQQEYLAFLPLALEQLRLDLLHYLRVALPKRKQQLGILTFDDLLIHLREV
LAKYPSFAARLADKFPAALIDEFQDTDPIQYDIFNTIYAQRTDKRLFFVGDPKQAIYGFR
GADIHTYLKASRRVDHRYTLAHNYRSHENFLRALNHLFAQSRQPFRNEIAYEEVSAGKAQ
ADLKVDPPLPSLRLWDWDRLDQEANVTQVQDEIAEAVADDIARLLNLAQQGKASIGEQPI
QSRDIAVLVRTNPQGERVKQALLKRGIASVKKSRESIFQTREAADLRTFLRAVAAPKQQA
LIKQALVSELFGYNATQLIALDTQPDALDRELEAFETWHQTWVNRGFMSMFRQWMIQRKR
YAFLLSLPDGERRLTNLLHLAEIVHTESRLTGHGMPTVIRWLQHQANLEFSENEHELRLE
SDENLVQIVTIHKSKGLEYSIVYCPYLWHEREARSLPTWFNWYDSQTDLACLQPALLASD
TEKYALYQAEQAENLRLLYVALTRAKYHCTIAMVSGHIKQFDYYSGLGWLLFGDLGNSKA
ILGKAVKESPISPEERQHLMQQRLKQIVNKSQGLMRYEALPVLAEPQRYQSPQSERVVNI
RRFSNRIPPVPKVGSFSGLTAGLDDEQPDYDVLVWQTAPITEANQGIFPRGAQAGSCLHK
MLEELDFVQPLAEQRDTVLVPALDKHGIKNTWLTAAEVLLNNTLQTPLTEGFSLSQLPRS
QRLDELEFYFPIQQLRVADLQRVLLKHLPKDWQAIQRAVRQLNFKQLTGYMKGFIDLIYE
YNGRYYIVDYKSNDLGSAFSDYTFEAMLNEMAEHHYYLQFLIYCVALHRYLKMRLPSYDW
HQHFGGVQYLFLRGMNPYQTGSGVFAYQPDWAFIQALDALFN
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccctaaatgccaaaactgttgccttagacggcagtaatctgattgaagccagt
gcaggtactggtaaaacgtggacgatctcgtggttatacctgcgtttgattgcgcatgag
gatttacgcgttaaccaaatgttagtggtcacgtatactgaagcagcgaccgcagaattg
cgtgaccgcattcgtaaacgcttagcggaagccctcgctttcttagaagatcagctcacc
gaggaaagctacgccgaattattgcaagccactgaacttgataaagcgatactgattcgt
cgcttgcaacgtgctttggtaagctttgatgaagcagcggtgtataccattcacgggttt
tgtaagcgggtgttaacggataacgcctttgaagcacatttacgctttgaaagcgaatta
gtggcgaatgaagatcagctcttaaccgagttaagcgatcaattttggtatcaatacttt
cataagcctgatgcgttgcactcacagcttttgcagacctataagcttacgccagatcgt
ttattaaaagatgtgcgctcgtttattggtaaaccctatttaaccgagccggtgttaggg
gttaatcccgataatttccaaaccttaaagcagggtttagaacagcaattaagtgtttgc
ggacaaacatgggcgaagcataaaactgctattcaacagttattatggcaagcgttacaa
gataaagttttaaatgcgaatgtctacaaaaaaactaagctcttggattggtataacgcc
ttagacagcctatttgttgactatattttaagcccgatggctgttgatgcgctggataaa
ttgtctgcggattgtatggcaggcaagctgaacaaaaataaagtagcgcctaagcacgta
ttttttacgcaagtacaagccgctgctaaagtgcaacaggaatatttagcgtttttgcct
ttagctttagaacaattgcgtttagaccttttgcattacttacgggttgccttgcccaaa
cgtaagcagcaattgggcattttaacctttgacgatttattgattcatctgcgggaggtc
ttagccaaatacccatcgtttgccgcgcgtttggccgataaatttccggcggcgttaatc
gacgaattccaagataccgacccgattcaatacgacatttttaatacgatttatgcgcag
agaaccgataagcgtttattttttgtcggcgaccccaagcaagcgatttatggctttcgc
ggcgcggatattcatacctatttaaaagcctcgcggcgtgtggatcatcggtataccttg
gcgcataactaccgttcgcacgagaattttctacgcgcccttaatcatttatttgcgcaa
tcacgccagccgtttcgtaatgaaattgcctatgaagaagttagcgcgggcaaagcgcaa
gccgatttaaaggttgatccgcctttaccgagtttgcgtttatgggattgggatcgctta
gatcaagaagccaatgttacccaagtacaagatgagattgccgaagccgttgcggatgat
attgcaagacttttaaatttagcgcagcaaggcaaggcgagtattggtgaacagccgatt
caaagccgtgatattgcggtgttggtgcggactaatccgcaaggcgagcgtgttaaacaa
gccttattaaaacgcgggattgccagcgtcaaaaaatcgcgggaaagcatttttcaaacc
cgtgaagccgccgacttacgcacgtttttacgggcagtggctgctcccaaacaacaggca
ctcattaaacaagccttggttagcgagttgtttggctataacgccacgcaattgattgcg
ctagacacccaaccggacgcgctagatcgggaattggaagcctttgaaacgtggcatcag
acgtgggtcaatcggggttttatgtccatgtttcggcaatggatgattcagcgcaaacgt
tacgcctttttattaagtttgccagacggtgaacggcgtttaaccaatctgctacacctt
gcggaaattgtgcataccgaaagccgtttaacagggcatggtatgccgactgttattcgt
tggttgcagcatcaagccaatttagaattcagtgagaatgaacacgaactacgcttagaa
agtgacgaaaatttagtacaaattgttacgattcataaaagtaaaggcttggaatacagc
attgtgtattgcccttatttgtggcacgaacgcgaggcacggtcattgccgacgtggttt
aattggtacgatagtcaaaccgatttagcctgtttgcaaccagctttactcgccagtgat
actgaaaagtatgccttataccaagccgaacaagctgaaaatttacgcttattgtatgtg
gcattaacccgtgcgaaataccattgcacgattgctatggtcagcgggcatattaagcaa
ttcgattattattctggcttgggttggttattatttggcgatttaggcaatagcaaagcg
attctcggcaaagcagttaaagaatcaccgattagccccgaagaacgccaacacttaatg
caacagcggcttaagcaaatcgtcaataaatcgcaaggtttaatgcgttatgaagcctta
cccgtgttggctgagccgcagcgttatcaaagcccgcaaagcgaacgcgtggtgaatatt
cggcgttttagcaatcgcattccgcctgtgcccaaggtgggcagtttcagcggcttaacc
gccggtttagatgatgaacaaccggattacgacgtgttggtttggcaaaccgcacctatc
accgaggcgaaccaaggtatttttccacgcggcgcacaagcgggtagttgtttgcataaa
atgctggaagaattggattttgtacaaccgcttgccgaacaacgcgacaccgtattagtg
cctgctttagacaagcacggtataaaaaacacttggttaactgccgccgaagtcttatta
aacaatacgctgcaaacgcctttaaccgagggttttagtttaagccaattgccgcgaagc
cagcgtttagatgaattagaattttactttccaattcagcaattacgcgtcgcggattta
caacgtgtattgctaaaacacttaccaaaagactggcaagcgattcaacgcgcggtacgg
caattgaatttcaagcaattgaccggctatatgaaaggctttattgacctgatctacgaa
tataacgggcgttattatattgtggattataagtcgaatgatcttggctcagcgtttagc
gattacacgtttgaggcaatgctcaacgaaatggcagaacaccactattatctgcaattt
ctgatttactgcgtagccttacatcgttatttaaaaatgcgcttgccaagttatgactgg
catcagcattttggcggcgtgcaatacctgtttttgcgtggtatgaacccttatcaaacc
ggctctggcgtgtttgcttaccaacccgattgggcgtttattcaagcgttagatgctttg
tttaattga
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