Candidatus Thiocaldithrix dubininis: QJT80_12665
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Entry
QJT80_12665 CDS
T09759
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJT80_12665 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdu03019
]
QJT80_12665 (pnp)
03016 Transfer RNA biogenesis [BR:
tdu03016
]
QJT80_12665 (pnp)
Enzymes [BR:
tdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
QJT80_12665 (pnp)
Messenger RNA biogenesis [BR:
tdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QJT80_12665 (pnp)
Transfer RNA biogenesis [BR:
tdu03016
]
Prokaryotic type
tRNA degradation factors
QJT80_12665 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
WGZ90327
UniProt:
A0AA95H3D5
LinkDB
All DBs
Position
complement(2687573..2689657)
Genome browser
AA seq
694 aa
AA seq
DB search
MAKITKTFQYGQHTVTIETGEIARQASAAVIINMNETVLLVTVVANKTEVAGRDFFPLTV
NYQEKFYAAGRIPGGFFKREARPTEEETLIARLIDRPIRPLFPDGFTNEVQVIATLMSLN
PSVSPDIAAMLGASAALKLAGIPFEGPIGAARVGYKNGEYLLNPSNEEIKSSALDLVVAG
TESAVLMVESEADELSEEVMLGAVVFGHEQMQVAIQAINELAADVNNAVWNWTAPAANQA
LIDALTASSEAALVEAFQISEKQARYARVDEILNAAIEQLAAKDGEQGLSAEEIKGEFKN
LEKKVVRGSILDGKPRIDGRDLQTVRPISVRVGVLPRTHGSALFTRGETQALVVATLGTE
RDAQVIDAIAGEYKDNFLFHYNFPPFSVGETGQIGSPKRREIGHGRLAKRGVKAMIPHVE
DFPYTIRCVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGERFAVLS
DILGDEDHLGDMDFKVAGSAEGVTALQMDIKINGITKEIMQQALVQAKAGRLHILGEMAK
GLDAPREEISEYAPRYVTMKINPEKIREVIGKGGETIRGITEKTGTSIDISDEGFIKIAA
VDAKAAYEARSMIEAITAEVELNRVYNGKVARIMDFGAFVTILPGKDGLLHISQISNDRV
ENVNDYLKIGDSVRVKVVEIDRQGRMRLSMKDAD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaattacaaagaccttccaatacggtcaacatacagtcacgattgaaactggc
gaaattgcccgccaagccagtgctgctgttattatcaatatgaatgaaaccgttttattg
gtaacggttgtggctaataaaaccgaagtggcgggacgcgacttctttccgttaactgtc
aattaccaagaaaaattttatgcggcaggtcgtattccgggtggctttttcaagcgtgaa
gcgcgtcctactgaagaagaaaccctaatcgcgcgtttaattgatcgtccgattcgccca
ttatttccagatggctttactaatgaagtgcaagtaattgctactttaatgtcattgaat
cctagtgtaagtcctgatattgcggctatgttaggcgcatcagcagcattaaaattagct
ggaattccgtttgaagggccaattggcgcggcgcgggtaggctacaaaaacggtgaatat
ttactgaacccttctaatgaagaaatcaaaagttcagcattggatttagtggtagcaggt
actgaatcagcggtattgatggtggaatccgaagccgatgaactcagcgaagaagttatg
ctgggtgctgtggtattcgggcatgagcaaatgcaagtggcgatccaagctattaatgaa
ttagccgctgacgtgaataatgcggtttggaattggactgcacctgcggctaatcaagct
ttaattgatgcgttgacagcttcctctgaagcggcactagtcgaagctttccaaatttcc
gaaaaacaagcgcgttatgcacgagttgatgaaattctgaatgccgcgattgagcaatta
gctgccaaagacggtgagcaaggcttaagcgcagaagaaattaaaggtgaatttaaaaac
cttgagaaaaaagtagtacgtggcagcatcttagatggcaaaccgcgtattgatggccgt
gatttacaaactgtgcgccccattagcgtacgtgtaggcgtattacctcgtacccacggt
tcagccttgtttacgcgtggtgaaacccaagccttagtggtagcgaccttaggcacagaa
cgcgatgcgcaagtgattgatgccattgcgggtgagtataaagataacttcttgttccat
tataactttcctcccttcagtgtgggcgaaaccggacaaattggttcgccaaagcgtcgt
gaaattggacatggtcgcttagccaaacgtggcgtgaaagccatgattccacacgtagaa
gattttccttacaccattcgttgcgtctctgaaatcactgaatcgaatggttcaagttca
atggccagcgtgtgcggtagttcactagcgctaatggatgcaggcgtgccaattaaagca
ccggttgcaggcattgcaatgggcttgattaaagaaggcgagcgctttgcggtattatcc
gatattttgggtgatgaagaccatttaggcgatatggatttcaaagtagcgggttcggca
gaaggtgtaaccgcgttacaaatggatattaaaatcaatggtattaccaaggaaatcatg
caacaagctttagtccaagctaaagcggggcgtttgcatatcttaggtgaaatggccaaa
ggtttagatgcaccgcgtgaagaaatttctgaatacgcgccgcgttatgtcaccatgaaa
atcaacccagagaaaattcgtgaagtcattggtaaaggtggcgaaacgattcggggcatt
actgaaaaaacgggcactagcattgatattagcgatgaaggctttatcaagattgctgcc
gttgatgctaaagccgcgtatgaagcgcgtagcatgattgaagcaattactgctgaagtt
gaattaaatcgtgtgtataacggtaaagttgcccgcattatggactttggtgcatttgta
acgattctaccgggcaaagacggtttgttacacatttcacaaatcagcaatgatcgcgtg
gaaaacgtgaatgattacctgaaaattggtgatagcgtacgcgtaaaagtagtggaaatt
gaccgtcaaggtcgtatgcgcttaagcatgaaagatgccgactag
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