Candidatus Thiocaldithrix dubininis: QJT80_13485
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Entry
QJT80_13485 CDS
T09759
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QJT80_13485
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
tdu02022
]
QJT80_13485
02035 Bacterial motility proteins [BR:
tdu02035
]
QJT80_13485
Two-component system [BR:
tdu02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
QJT80_13485
Bacterial motility proteins [BR:
tdu02035
]
Pilus system
Twitching motility proteins
QJT80_13485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
HTH_28
HTH_23
AAA_5
Mg_chelatase
Pre_tape_measure
AAA_16
VpsR
Peripla_BP_4
DUF3885
HTH_50
Motif
Other DBs
NCBI-ProteinID:
WGZ90486
UniProt:
A0AA95H462
LinkDB
All DBs
Position
2855819..2857225
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AA seq
468 aa
AA seq
DB search
MTEQTVLIIDDEPDIRELLEITLLRMGLDTVTACNVQEALEKIEQYRPNLCLTDMKLPDG
NGIDIVRYLQKNHSQTPVAVITAFGSMDTAVQALKAGAYDFVSKPVDLPKLRELIQTALK
LRQGKAKPNSTTYKDDAEPHADGILGHSPAMQQLKATISKLARSQAPVYIHGESGSGKEL
VAHQIHLQGSRAKAPFIPVNCGAIPENLMESEFFGHKKGSFTGAVADKQGLFQAAHKGTL
FLDEVADLPLTMQVKLLRAIQEGAVKPVGGVEEIPVDVRILSATHKSLEHEVAAGAFRQD
LYYRLNVIKLKVPPLRERQDDIILLADFFLQKIAERWQMPPIRLSAAARDELMRYSFPGN
VRELENVLERASTLCDNNTIQPDDLQLPINTELNQPTTPLPTINKPEIKRPEAEPLPLWN
PIDEDAERELILRALDQTRWNRTKAAEVLGMSFRQLRYRIQKYGLDES
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacagactgttttaattattgatgatgagcctgatatacgcgagttattagaa
ataaccttgctgcgtatgggtctcgatactgttactgcctgcaatgtacaagaagcctta
gaaaaaattgagcaatatcgtcccaatttatgtttaaccgatatgaagttgccggacggc
aatggcattgatattgtcagatatctacaaaaaaatcactcacaaaccccggtcgcggtt
attaccgcctttggtagcatggatactgcggtgcaagccttaaaagcgggtgcgtatgat
tttgtatccaagccggtagatttacccaaattacgcgaactcatccaaaccgccttaaag
ttacgccaaggtaaagctaaaccgaatagcactacttacaaagacgacgctgaaccgcac
gctgatggtattttggggcattcgcctgctatgcaacaattaaaagcgactattagcaaa
ttggcacgtagccaagcgcctgtatacattcatggcgaatccggcagtggtaaagaatta
gttgcacatcaaatccacttgcaaggctcacgagctaaagcgccgtttattccagtgaac
tgtggtgcaattcctgagaacttaatggaaagcgagtttttcgggcataaaaaaggtagt
tttacgggcgcagtagctgataaacaaggtttgtttcaagccgcccacaaaggcacttta
tttttagatgaagtggcggatttgccgttaaccatgcaggttaaactattacgggcgatt
caagaaggggcggttaaacccgtgggcggtgtggaagaaattccggtggatgtacgtatt
cttagcgccacccataaaagcttagaacatgaagtcgcggcaggcgctttccgccaagat
ttatactaccgtttaaatgtcatcaaactaaaagttccgccgttacgcgaacgccaagat
gatattattttattagccgattttttcttacaaaagattgcagaacgttggcaaatgcca
ccgattcgtttatcagcggcggcacgcgacgaactcatgcgttatagcttccccggcaat
gtgcgcgaactggaaaacgtgttagagcgtgccagcactttatgcgacaacaacaccatt
caacccgatgatctacaactaccgattaatacagaacttaaccaacccactacacctcta
ccgacgatcaataaaccggaaattaaacgaccggaggctgaacctctaccattgtggaat
ccgattgatgaagacgcggaacgtgaattgattctacgcgctttagaccaaacccgttgg
aatcggactaaagcggcagaagtattaggaatgagttttcgacaattacgctatcgcatc
cagaaatacggcttggatgagagctaa
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