Candidatus Thiocaldithrix dubininis: QJT80_13660
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Entry
QJT80_13660 CDS
T09759
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QJT80_13660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdu03021
]
QJT80_13660 (rpoC)
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_13660 (rpoC)
Enzymes [BR:
tdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QJT80_13660 (rpoC)
Transcription machinery [BR:
tdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QJT80_13660 (rpoC)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QJT80_13660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
DUF3150
Motif
Other DBs
NCBI-ProteinID:
WGZ90520
UniProt:
A0AA95H6P9
LinkDB
All DBs
Position
complement(2876752..2880939)
Genome browser
AA seq
1395 aa
AA seq
DB search
MKDLLNFHKREQENHDFDAIKVGLASPEVIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFETFVVTEGGMTTLERGQLLSDEGYLEAVEEYGDEFEASM
GAEAIFNLLSTIDLKDEVNKMREEIAETGSETKLKRLGKRLKLMESFLSSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLQRRGLATTIKAAKKLVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNVLSPANGDPIIVPSQDIVLGLYYMTRDAINAKGEGMVFADPAEAQRAYETG
NAALHAKVKVRIADSIKDEDGELIRRTRLIDTTVGRALLTNIMPEGLPFENFNVVLKKKA
ISKLINEAYRRVGLKAAVIFADQLMYTGYRYATRAGVSFCSDDMMIPEKKADLLAEAEEA
VLEIQNQFASGLVTQGERYNKVVDIWASTNEKVAKAMMEKIGKQEVVDAEGKIVYQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVTIEDCGTEQGILMRPIIEGGDVVEPLAERVL
GRVVAQDVKKGEDVLIPAGTFLDESWVKEIDALGVDEILVRSAITCETRYGVCAKCYGRD
LARGHIVSKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSINVKAAGQVHFVN
VKTVRNKDGKLVVVSRSGELGVVDSNGRDKERYKLPYGAILSVEQYAQVSAGQQVATWDP
HTHPIVSEVAGRIDFSDFLDGITVQTKIDDITGLSSIEVMDPRNRPSQGRELRPTVRLLD
ANGDSVFFEGTKIPVQYPLPAGAIVSSTNGANVGVGEIVARLPQASSKTRDITGGLPRVA
DLFEARKPKDGAILAEKTGTISFGKETKGKQRVIITNEDGEQYEELIPKWRNLDVFEGEK
INRGEVIADGEPSPHDILRLLGATALAEYQVKEIQDVYRLQGVKINDKHIEVIVRQMMRK
VEIIDAGDSKFLRGEQTDYWRVVEANKELEKEGKLKIVYERLLMGITKASLVTDSFVSAA
SFQETTRVLTEAAVRGARDELRGLKENVIVGRLIPAGTGLAYHDDRRSKRNEYYYERPHS
SESISFGEPLDMDSD
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttattgaatttccacaagcgagaacaagaaaatcatgactttgacgcgatc
aaggttggtcttgcatcgcctgaagttattcgttcttggtcttatggcgaagttaaaaag
ccagagaccattaactatcgtacctttaaacccgaacgtgacggtttattctgtgccaag
atttttggacccgtcaaagactatgaatgcctatgcggtaagtataagcgtttaaaacat
cgtggtgtggtttgtgaaaaatgtggcgttgaagtcactcaaactaaagtccgccgcgag
cgtatggggcatattgaattagccagccctgtggcacacatttggttcttaaaatcactg
ccttcgcgtattggcttaatgctggatatgaccttgcgtgatattgagcgcattttgtat
tttgaaaccttcgtggtgacagaaggtggcatgaccactttagaacgtggtcaattgcta
agcgatgaaggttatttagaagcggttgaagaatacggcgatgaatttgaagccagcatg
ggtgcagaagcgattttcaatttgctaagcaccattgatctcaaagatgaggtcaataaa
atgcgcgaagaaatcgctgaaactggctctgaaactaaattaaaacgtttaggtaaacgt
ttgaaattaatggaatcattcttaagctctggcaataaaccagaatggatgattatgacc
gtgcttccagttttaccaccggatttacgtccattagtgccattagatggtggtcgtttt
gcgacgtctgatttgaacgacttatatcgtcgagtgattaaccggaataatcgtttaaaa
cgcttgttggagctgaatgcgccagacattatcgtgcgtaatgaaaaacgcatgttgcaa
gaatccgttgacgccttattagataatggtcgtcgtggtcgtgcgattaccggttctaac
aaacgtccattgaaatccttatctgacatgattaagggtaaacaaggtcgtttccgtcag
aacttattaggtaaacgggttgactactctgggcgttcggtcatcgtggtaggtcctacc
ttacgtttgcatcaatgcggtttgccgaaaaaaatggcgttggagttattcaagcctttc
attttcggtaagttacaacgccggggtttagcaaccactattaaagcagcgaaaaagctg
gttgaacgtgaaacggcagaagtttgggatattctggcggaagtgattcgtgaacatccg
gtgatgttaaaccgtgcgccaaccctgcaccgtttagggattcaagcgtttgaaccgacc
ttaattgaaggtaaagccattcaattacacccgttggtgtgttccgcattcaacgcggac
ttcgacggcgaccaaatggcggtgcatgtgcccttatcattagaagcgcaattagaagcg
cgtaccctgatgatggcgaccaacaacgtcttatcgcctgcaaatggtgatccgattatt
gtgccttcacaagacatcgtattgggtctgtattacatgactcgtgatgcgattaatgcc
aaaggcgagggtatggtatttgcagacccagcggaagcacagcgtgcttacgaaacgggc
aatgcagcgttacatgccaaagttaaagtacgaattgccgacagcattaaagatgaagat
ggtgagttaattagacgtacccgtttaattgataccacggttggacgtgcgttattaacc
aatatcatgccggaaggtttgccttttgaaaacttcaacgtcgtgttgaagaaaaaggct
atttctaagctgattaatgaagcgtatcgtcgcgtgggtttaaaagcagccgttatcttt
gctgaccaattgatgtataccggttatcgttatgcaacgcgtgcaggggtttccttctgc
tcggatgacatgatgattcctgagaaaaaagcagatttattggcagaagctgaagaagct
gttttggaaattcaaaaccaatttgccagcggtttggtaacacaaggcgaacgttataat
aaggtcgtcgatatttgggcgagtaccaatgaaaaagtcgcgaaagcgatgatggaaaaa
attggtaagcaagaagtggtcgacgctgaaggtaaaatcgtttaccaagagtcttttaac
tctatctatatgatggcggattctggagcgcggggttctgcggcacagattcgtcagttg
gcgggtatgcggggcttgatggcgaagccagacggttcaatcatcgaaacaccgattact
tctaacttccgtgaaggtttgaacgtattacaatacttcatctcaacccacggtgcgcgt
aagggtttggcggataccgcgttaaaaaccgcaaactctggttacttgactcgtcgtttg
gttgacgtagcgcaagacatggtcgtaaccattgaagattgtggtacagagcaaggtatc
ttgatgcgtcctatcattgaaggtggtgacgtagttgagccattagccgagcgcgtatta
ggtcgggttgtggcgcaagatgtgaagaaaggcgaagacgttttaattccagcgggtact
ttcttagatgagtcttgggttaaagaaattgatgcccttggcgtagatgaaattttggta
cgttcagccattacctgtgaaacgcgttacggtgtttgtgcaaaatgttatggtcgtgac
ctagctcgtggtcatatcgttagcaaaggcgaagcggtcggggttattgcggcacaatct
atcggtgagccgggtactcagttaaccatgcgtaccttccatatcgggggtgcagcgagc
cggtcagcagcggaaagcagtattaatgttaaagctgcgggtcaagtccactttgtcaat
gtcaaaactgtgcgcaacaaagacggcaaattggtggttgtgtcacgttctggtgaacta
ggggttgtggatagtaacggtcgtgataaagagcgttataaactgccttatggtgcaatc
ttatcggttgaacaatacgcccaagttagtgcaggccaacaggttgcaacgtgggatcca
catacccatccaatcgtgtctgaggtagcgggtcgtatcgactttagcgacttcttagac
gggattacggtacaaactaagattgatgacattactggtttgtcttccattgaggttatg
gatccgcgcaaccgtcctagccaaggccgtgaattacgcccaacggtacgtttattagat
gcgaacggtgatagcgtcttttttgaaggcactaaaattcctgttcaatatccattgcct
gcgggtgcaatcgttagctcaacgaatggcgcgaatgtaggtgtaggtgagatcgtcgca
cgtttaccacaagcttcttctaaaacgcgtgatattaccggtggtttgccacgggttgca
gacttgtttgaagcacgtaagccgaaagacggcgcaattcttgcggaaaaaactggtaca
atttcatttggtaaagaaactaaaggtaaacaacgggttatcattactaatgaagacggc
gagcaatacgaagagttaattccaaaatggcgtaacttggatgtatttgagggtgaaaaa
atcaatcgcggtgaggttatcgcggatggtgaacctagcccacacgacatcttacgcttg
ttgggtgcaaccgccttggctgaataccaagtcaaagaaattcaagatgtttatcgtctg
caaggtgtaaaaatcaatgataaacacattgaagtcatcgtgcgtcagatgatgcgtaaa
gttgaaatcattgatgcaggtgatagtaaattcttacgtggtgaacaaactgattattgg
cgtgtggttgaagctaataaagaattggaaaaagaaggtaagctgaaaatcgtttatgaa
cgtttactgatggggattacaaaagcctcactcgtaaccgactcatttgtttcagcggca
tctttccaagaaactacgcgggtattaaccgaagctgctgtacgtggagcgcgtgatgag
ttacgtggtctgaaagaaaacgtcattgttgggcgtttaattccagccggtacaggtcta
gcttatcacgatgatcgtcgtagtaagcgtaatgaatattactatgaacgtccccattct
agtgaaagcattagttttggtgagcctttagacatggactccgactaa
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integrated database retrieval system
