Candidatus Thiocaldithrix dubininis: QJT80_13665
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Entry
QJT80_13665 CDS
T09759
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QJT80_13665 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdu03021
]
QJT80_13665 (rpoB)
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_13665 (rpoB)
Enzymes [BR:
tdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QJT80_13665 (rpoB)
Transcription machinery [BR:
tdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QJT80_13665 (rpoB)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QJT80_13665 (rpoB)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WGZ90521
UniProt:
A0AA95H9E9
LinkDB
All DBs
Position
complement(2880946..2885028)
Genome browser
AA seq
1360 aa
AA seq
DB search
MGLSYTEKKRIRKDFGKRPQILEVPDLLTIQLESYRQFLQLDKPVQERRDMGLHAAFSSV
FPIISYNSYVALEYVDYRLAEPVFDVQECQLRGLTYAASLRVKLRLVIYDKEAAVEAKVV
KSIKEQDVYLGELPLMTDKGTFIINGTERVIVSQLHRSPGVFFEHDKGKSNTAGKLLHSA
RVIPYRGSWLDFEFDPKDSIFVRIDRRRKLPSTILLRALGMQNEGILDYFFDKTQVHLSD
ESVEMELVPERLRGELASFDILLDGKVLVETGRRITAKHIRQLEKSGLNKLVVPENYMNG
KILAHDVVDPVTGELLASANAEITDGLLDKFRDNDVTKFRVLYTNDLDRGPFISNTLNID
TTTSPLEAQIEIYRMMRPGEPPTKEAAENLFSNLFFTDDRYDLSAVGRMKFNRRLGREAA
TGKGVLDQDDILAVLKKLIDIRDGRDDVDDIDHLGNRRVRSVGEMAENAFRVGLVRVERA
VKERLSMAESEGLMPQELVNSKPVSASIKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPYRKV
IDGKPTMQIDYLSAIEESNYVIAQASAALDADGRLSDEFVSCRYKNEFTLMPADTVQYMD
VSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRADKPLAGTGMERAVAQDSGS
AISARRGGVIDSVDAGRIVIRVNDEEADERGGVDIYNLIKYTRSNQNTCINQRPIVKVGD
MVARGDVLADGSSTDLGELALGQNMFIAFMPWNGYNYEDSILLSERVVDEDRYTSIHIEE
LQCLARDTKLGPEEITADIPNVSESLLAKLDASGIIHVGAEVKPNDILVGKVTPKGESQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGMAGTVIDVRVFTRDGVERDARALAIQEEDLKK
VRKDLRDELRIYEADIFDRFAKLVIGKPALGGPKRLVGGTLVTEEYLDTLERREWFLIRM
QDEDVNTQLEGLAAQIEEKKKHYESRLQKQRDKLMAGDDLAPGVMKMVKVYIAVKRRMQP
GDKMAGRHGNKGVVSRIVPVEDMPYLANGQTVDIVLNPLGVPSRMNVGQVLETHLGWAAK
GLGEKIGRMIDAKAKIDEMRQFISEVYATGGNPNQDQVVDELSDEEVIDLAKNLRKGVPM
ATQVFDGAHEHEIKAMLKLADLPESGQTTLFDGRTGDAFERKVTVGYMHMLKLNHLVDDK
MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRN
RMYKNIVDGDHYMEASMPESFNVLMKEIRSLGLNIELERD
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgggactgagttataccgaaaagaaacgaatccgcaaagattttgggaagcgaccacag
attctggaagtacctgacctactcaccattcagttggagtcttatcgtcagttcttgcaa
ttggacaagccggttcaagaacgacgcgacatgggactccatgcagcgttttcctctgtt
tttccgattattagttataatagctatgttgcgcttgagtatgtcgattatcgcttggct
gagccagtgtttgacgtacaagagtgtcaattacgcggtttaacgtatgctgcttccttg
cgcgtaaaattgcgcttggtaatttatgataaagaagcagccgtcgaagctaaagtcgtt
aaatctattaaagagcaagatgtttacttgggtgaactgccattaatgaccgataagggt
acatttattattaatggtactgaacgggttattgtgtcgcaattacatcgttcaccaggt
gtgttttttgaacatgataaaggcaaatccaataccgcaggtaaattattacacagtgcg
cgggtgattccttatcgtggttcatggttagattttgaattcgatccgaaagattcaatc
tttgtacggattgaccgtcgccgtaaattgccttccacgattttattacgtgcgttaggt
atgcaaaacgaaggaattttagattatttcttcgataaaacgcaggttcacttaagtgat
gaatctgtagaaatggagttagtgcccgagcgtttacggggtgaactggcttcatttgat
attttattagatggcaaagtattggttgagacgggtcgtcgcattacggctaaacatatt
cgccaattagaaaaatcaggtttaaacaaattagttgtgcctgaaaattatatgaatggc
aaaatattagcgcatgatgtggttgatccggtaacaggcgaactgttagccagtgccaat
gcggaaatcacggatggtttattagataaattccgtgacaatgatgtgactaagttcaga
gttttatacaccaatgatttggatcgcggtccattcatttctaatactttaaatattgat
accaccactagcccattagaagcgcagatcgaaatttatcgtatgatgcgtccgggcgaa
ccacccactaaagaagcggctgagaatttgttctctaacttattctttactgatgatcgt
tatgatttatcagctgtcggtcgtatgaagtttaaccgtcgtttaggacgtgaagcggca
acgggcaaaggcgttttagatcaagacgatattttggcagttctgaaaaagctgattgat
attcgcgatggtcgcgatgatgtagatgatattgaccatctcggtaaccggcgcgtacgt
agtgtgggcgaaatggcagaaaatgccttccgcgtgggcttagtgcgggttgaacgtgcg
gttaaagaacgtttgagtatggcggaaagcgaaggcttaatgccgcaagaactggttaat
tctaaacctgtgtctgcgtcgattaaagaattcttcggttctagccagttgtcacagttt
atggatcaaaacaatccattatctgaagtgactcataaacgccgtatttctgcgttaggt
ccgggtggtttaacgcgtgaacgtgcaggctttgaggtgcgcgacgtacatccaacccat
tacggtcgggtatgtccgattgaaacgcctgaaggtccaaacatcggtttgattaactca
ttggcggtgtatgcccgtactaacgattatggtttccttgagaccccgtatcgtaaagtt
attgatggcaaaccgaccatgcagattgattatttgtctgcaatcgaagaatccaattat
gttatcgcacaggcaagcgctgctttagacgcggacggtcgtttatccgatgagtttgtt
tcttgtcggtataaaaatgaatttacgttgatgccagccgataccgtgcaatatatggac
gtatcgcctaagcagatcgtatccgttgcggcttctttgattccattcttagagcacgat
gatgcgaaccgtgccttgatgggttcaaacatgcaacgccaagccgtaccttgtttacgt
gcggataagccattagccggtacaggtatggagcgggcagtcgcgcaagactctggttct
gctatttctgcacgtcgaggtggtgtaattgattcggtagatgcaggtcgtatcgttatt
cgtgtgaatgatgaggaagcggatgagcggggtggggttgatatttacaacctgattaag
tacacccgttctaaccaaaatacctgtattaaccaacgcccaatcgtcaaagttggcgat
atggtagcgcgtggtgacgtattagcagacggttcatcaactgacttaggcgagttagcg
ttaggtcagaatatgttcatcgcgttcatgccttggaacggttacaactacgaagactcc
attttattatctgagcgcgtggttgatgaagatcgttacacttcaattcacattgaagag
ttgcaatgtttagcgcgtgacaccaagttaggccctgaagaaattacggctgatattcca
aacgttagcgaaagtttgttagcgaaattggatgcatccggcattattcatgtaggggca
gaagttaagcccaacgatattctggtaggcaaagtaacacctaagggtgaaagccaatta
acgccagaagaaaaattgttacgggcaatcttcggtgaaaaagcctctgatgttaaagat
acctctttacgcgtacccacaggcatggctggtacagtcattgatgtgcgtgtatttaca
cgggatggtgtcgagcgtgatgcccgtgccttagcgattcaggaagaagatctgaaaaaa
gttcgtaaagatttacgcgatgaattgcggatttacgaagcagatatttttgaccgtttt
gcaaaattagtgattggtaagcctgcattgggcggtcccaaacgcttagttggcggtacg
ctggtcacggaagagtatttggatactttagagcgccgcgaatggttcttgattcgtatg
caagatgaggatgtcaatactcagctcgaaggtttggctgcgcaaatcgaagagaagaaa
aagcattacgaaagtcgcctgcaaaaacaacgcgataaattaatggcaggtgatgattta
gcgcccggcgttatgaaaatggtgaaagtgtatattgcggttaaacgccgtatgcagccg
ggtgataaaatggcaggtcgtcacggtaacaagggtgtggtatcgcgcattgtaccggtg
gaagacatgccttatttagcgaacggtcaaaccgtggatatcgtgttgaacccattgggc
gttccgtcacggatgaacgttggtcaggttttggaaacacacttaggttgggcagctaaa
ggcttaggtgaaaaaatcggtcgaatgattgatgccaaagccaaaattgatgaaatgcgt
caatttatcagtgaagtctatgcaaccggtggcaaccctaatcaagatcaagtcgttgat
gaattaagcgacgaagaagtgattgatttagcgaaaaacctacgcaaaggcgtgccaatg
gcaactcaagtctttgatggcgcgcatgagcatgaaatcaaagcgatgttgaagttggcc
gatttaccggaaagcggtcaaaccactttattcgatggtcgtaccggtgatgcattcgag
cgtaaagtaaccgtgggttatatgcatatgttgaaactcaaccacttggttgatgacaaa
atgcatgcacgttctactggaccttatagcctagtaacgcagcaaccattgggtggtaaa
gcgcaatttggtggtcagcgcttcggtgaaatggaggtgtgggcactggaagcttacggt
gcggcgtataccttacaagaaatgctcacagttaagtcggatgacgtcaatggacgtaac
cgtatgtacaaaaacattgtggatggcgaccactatatggaagccagtatgcctgagtcc
ttcaatgtattaatgaaggaaatccgctcacttggtctgaatatcgaactggaacgggac
taa
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integrated database retrieval system
