Candidatus Thiocaldithrix dubininis: QJT80_14340
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Entry
QJT80_14340 CDS
T09759
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tdu03016
]
QJT80_14340
Enzymes [BR:
tdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QJT80_14340
Transfer RNA biogenesis [BR:
tdu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QJT80_14340
Prokaryotic type
tRNA splicing ligases
QJT80_14340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7121
Motif
Other DBs
NCBI-ProteinID:
WGZ90651
UniProt:
A0AA95H4J6
LinkDB
All DBs
Position
complement(3017412..3018608)
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AA seq
398 aa
AA seq
DB search
MPIKFSLNKGNVPVKVFTDDIDDASIQQLGNMAQLPFIHSHIAAMPDVHVGIGATVGSVI
PMRGAIVPAAVGVDIGCGMNAVRLSLKANDLPDNLYKLRAAIEKSVPVGFEEHNEPSVQA
ATVNNMAAHLKRITDKHPGIMKMQRNFQNTWGRQLGTLGGGNHFIELCLDEQDDVWVMLH
SGSRGIGNKIGQYFIEKAKKDMGKVLGNLPDKDLAYFTEGTQHFEDYVEAVGWAQDYAML
NRREMMRLVLEALQKHLPKFTTTQEAINCHHNYVQQEQHFGQEVYVTRKGAISAQLGQLG
IIPGSMGAKSYIVRGLGNQQSFCSCSHGAGRRMSRTEAKRRFNALDLEQQTQGIECRKDK
GVVDEIPAAYKDIDTVMQHQTDLVEVVHTLRQIICIKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctattaaattcagcctaaacaaaggcaatgttccggttaaagtatttactgacgat
attgatgacgcgtctattcaacagttaggcaatatggcgcagttgccatttattcattcg
catattgcagctatgccagatgtgcacgtaggcattggcgcgaccgttggttctgtgatt
cccatgcgcggtgcgattgtgcccgccgccgttggggtggatatcggttgtggcatgaat
gcagtgcgtttatctctgaaagccaacgatctacccgataatttatacaagttgcgggcg
gcgattgaaaagtcggtgcccgttgggtttgaggagcacaatgaaccctcagtacaggcg
gcaaccgttaataatatggccgcccatttgaagcgtattaccgataagcaccccggcatt
atgaaaatgcaacgcaactttcaaaatacatgggggcggcaactcggcaccttaggcggc
ggtaaccattttattgaattgtgtttagatgaacaggatgatgtatgggttatgctgcac
tcaggtagccgaggaattggcaataaaattgggcaatactttattgaaaaagctaaaaaa
gatatggggaaagtcttaggcaatttgcccgataaagatttagcttatttcacggaaggc
acgcagcattttgaggattatgtggaagcggtcggttgggcgcaggattatgccatgctg
aatcgccgggaaatgatgcgtttggtgttagaagccttacaaaagcatttgccaaaattt
accacaacgcaagaagcgatcaattgccaccataattatgtgcagcaagaacagcatttt
gggcaagaagtgtatgttacccgtaaaggtgcaatcagtgcgcaattagggcaattgggc
attattccgggcagtatgggcgcgaaatcctatattgtgcggggcttaggcaatcagcaa
tcgttttgctcgtgttcacacggggcagggcggcggatgagccgcaccgaagctaaacgc
cgttttaatgccttagatttagagcaacaaacccaaggaattgagtgtcgaaaggataaa
ggggtcgtggatgaaattcccgccgcttataaagacattgataccgtcatgcagcatcaa
acggatttagtggaagtggtgcataccctacgccaaatcatttgtattaaaggctaa
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