Candidatus Thiocaldithrix dubininis: QJT80_15245
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Entry
QJT80_15245 CDS
T09759
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03420
Nucleotide excision repair
tdu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QJT80_15245 (uvrD)
03430 Mismatch repair
QJT80_15245 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_15245 (uvrD)
Enzymes [BR:
tdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QJT80_15245 (uvrD)
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QJT80_15245 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
QJT80_15245 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WGZ90818
UniProt:
A0AA95H7X4
LinkDB
All DBs
Position
3190536..3192734
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AA seq
732 aa
AA seq
DB search
MDISPILNPLNSQQRLAVSAPLQPVLVLAGAGSGKTRVLVHRIAWLIDVEGASPFSILAV
TFTNKAANEMRGRIQSLLAAPVGGMWVGTFHGLAHRLLRLHWQVAKLPQTFQILDSEDQL
RMIKRILKGLNLDETHFPPRQVASFINSRKDEGSRPQHLEDRGDYSTRQYISIYSAYEDA
CQRNGVVDFAELLLRSLEILRDNADLQQHYRARFKHILVDEFQDTNSLQYAWLRLIAGDN
NPIFAVGDDDQSIYGWRGAKIENIRNFTKHFPKCEIVRLEQNYRSTATILNAANALIAHN
RGRLGKNLWTADKAGEPLQLYSAFNELDEARFVAARIQKWLEQGGKRRDIAILYRSNAQS
RVFETTFNEFRIPYRVYGGLRFFERAEIKDALAYLRLSLNRADDASFERVVNHPTRGIGD
RTIDILRTHARSTNTSLWEMATRVHELGELTARAATAVLNFVQLINQMARDTAVLPLGER
VQTIIEMSGLKPHFLAKEKGEQGQARVDNLDELVTAAQSYSYVPTDDMPRMDLLSAFLSH
AALEAGEGQAEVGDDCVQMMTLHSAKGLEFPLVFLCGMEEGLFPHQMSADDPNRLEEERR
LCYVGITRAEKSLVFSYAEQRQLHGQTKFNPPSRFLRELPNDLIQEIRPKLKTNINSAYR
TQTANNVPKISNRYAESETGYAIGQRVRHVKFGDGVITGSEGAGAHARVQVNFKSAGSKW
LVLGYANLEKLT
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatatatcaccgattttaaaccccttaaatagccagcaacgccttgcggtgtccgcg
cccctgcaacctgtcttagtgttagcgggtgcaggcagcggtaaaacccgcgtgttggta
catcgcattgcgtggttaattgatgtagaaggcgcatcaccgtttagtattttagcggtc
acctttaccaataaagccgccaatgaaatgcgcgggcgtatccaatccttattagctgcg
ccggtgggtggcatgtgggttggtacctttcatggcttagcgcatcgtttactacgcttg
cattggcaagtggctaaattaccgcaaacctttcagattctggattctgaagatcaatta
cgcatgattaagcgtattttgaaaggtttgaatctggatgaaacccattttccgccgcgc
caagtcgccagttttattaattcgcgcaaagacgaaggttcacgcccccaacacttggaa
gatcgtggcgattacagcacgcggcaatatatcagtatttatagcgcttacgaagacgct
tgccaacgcaatggcgtggtggattttgcggaattattgctgcgttccttagaaatactg
agggataacgccgatttacagcagcattatcgtgcgcgctttaagcatattttggtcgac
gaatttcaagatacgaatagcttgcaatatgcatggctgcgtttaattgcaggtgacaac
aatccgatttttgcagtgggcgatgatgaccaatccatttacggttggcgtggggcaaaa
atcgaaaatatccgcaatttcaccaagcatttcccaaaatgcgaaattgtacgtttagaa
caaaactaccgttcgactgccacgattttgaatgcagccaatgccttaattgctcataat
cgcgggcgcttgggcaaaaatttatggacagcagataaagcaggcgaacctttacagctt
tattcagcatttaatgaattggatgaagcgcgtttcgtagcggctcgtattcaaaaatgg
ttagagcaaggtggcaagcggcgtgatattgctattttgtatcgttctaatgcgcaatcg
cgggtttttgaaaccacctttaatgagtttcggattccgtatcgagtgtatggcggctta
cgcttcttcgagcgggcagaaattaaagacgcgctggcctatttacgcttaagcttaaat
cgagcggatgatgcttcatttgaacgggtagtgaatcaccctacacgcggtattggcgac
cgcaccatagatattctgcgcacgcacgcccgtagcactaatacctcgctttgggaaatg
gcaacccgtgtacacgaattaggcgaactgaccgcgcgtgcggcaactgcggtattgaat
ttcgtgcaattgattaatcaaatggcaagggataccgccgtgttaccgctaggcgaacgt
gtacaaaccataattgaaatgtctggtttaaaaccgcattttttagccaaggaaaaaggc
gaacaagggcaagcccgtgtggataacttagacgagttagtcacggctgcacaaagctat
agttatgtgccaactgatgatatgccacgtatggatttattatcggctttcctgtcacac
gcagccttagaagcaggtgaagggcaggctgaagtgggcgatgattgcgtgcaaatgatg
accttgcactccgctaaaggcttagagttccccttagtgtttctatgcggtatggaagaa
ggtttatttccacatcaaatgtcagcggatgacccgaatcgcttagaagaagaacgtcgc
ttatgttatgtcggtattacccgtgccgaaaaaagcttggtattttcctatgctgaacaa
cgccaattacacgggcaaaccaaatttaatcccccttcacgttttttgcgcgaattgccg
aatgacttaatccaagaaatccgccctaaactcaagactaatattaattcagcctaccgc
acgcaaacggcaaataacgtaccgaaaatttccaaccgttatgcagaaagcgaaaccggc
tatgctattgggcaacgtgtgcgccatgttaaattcggcgacggcgttattacgggctca
gagggagcgggcgctcatgcacgcgtgcaagttaattttaaaagtgcaggctctaaatgg
ttagttttaggctatgctaatttggagaaactaacctag
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