Triplophysa dalaica: 130407162
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Entry
130407162 CDS
T09616
Symbol
col2a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04510
Focal adhesion
tdw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130407162 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130407162 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130407162 (col2a1a)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130407162 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Frataxin_Cyay
SNARE
Motif
Other DBs
NCBI-GeneID:
130407162
NCBI-ProteinID:
XP_056585849
LinkDB
All DBs
Position
18:7466006..7483688
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AA seq
1420 aa
AA seq
DB search
MFRLADSRTLLLLVATHCVLVSLVRCQQEDDLSISAKGQKGEPGDIADVVGPKGPAGPMG
PPGEQGSRGERGSKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMATG
FDEKAGNAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPGGAIGPRGPSG
PPGKSGSDGEAGKPGKGGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAAG
AKGESGTAGENGSPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVGPSGAPG
FPGSPGSKGEAGPTGARGPEGQQGQRGEGGTPGSPGPSGASGNPGTDGIPGAKGSAGSAG
IAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIXGFKGEAGPKGERGVAGPLGPAGPSG
EEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGLGGPKGGTG
DPGRTGEPGLPGARGLTGRPGDGGPQGKVGPSGAPGEDGRPGPPGPIGTRGQPGVMGFPG
PKGANGEPGKPGEKGLLGRTGLRGLPGKDGETGPSGPPGPHGAVGERGEQGQPGPSGFQG
LPGPSGPPGESGKPGDQGLPGEAGAAGITGPRGERGFPGERGGAGPQGLQGPRGLPGTAG
TDGPKGAIGPAGASGSQGPPGLQGMPGERGAVGISGAKGDRGDSGEKGPEGASGKDGSRG
LTGPIGPPGPVGPNGAKGETGTVGPIGSPGVRGAPGDRGELGAPGPAGFAGPPGADGQPG
IKGEQGESGQKGDAGASGPQGPSGAPGPLGPTGIAGPKGARGAQGAPGATGFPGAAGRVG
TPGPNGNPGAAGPAGPAGKDGPKGIRGDAGPPGRAGDAGLRGPSGSPGEKGMPGEDGPPG
ADGPSGPSGLAGQRGIVGLPGQRGERGFAGLPGPSGEPGKQGAPGSSGDRGPPGPVGPPG
LSGPAGEPGREGNAGSDGPPGRDGAAGVKGERGNTGPLGAPGAPGAPGAPGSVGPVGKQG
DRGENGPQGPAGPTGSAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFTGLQGLPGPPG
SPGDQGAAGPAGPSGAKGLSGPVGPSGKDGSNGQPGPIGPPGPRGRSGETGPVGPPGNTG
PPGPPGPPGPGIDMSAFAGLAHTEKGPDPLRYMRADEASSSLRQHDVEVGATLKSINSQI
EDIRTPDGSRKNPTRSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVYCNMETGETCLKP
STPKIPRKNWWTSKSKTHKHIWFGESMNGGFHFSYAENGQTSTANIQMNFLRLLSTEATQ
TITYHCKNSVAYMDQATGNLKKALLLQGSNDVEIKAEGNSRFTYGVLEDGCKKHTGQWAK
TVIEYKTQKTSRLPIVDIAPMDIGGEDQEFGVDIGAVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagcggattcacggactctcctgctactcgtagcaacgcattgcgttttg
gtatcccttgtgagatgtcagcaagaagatgacctgtcgattagtgcaaagggacagaaa
ggagaaccaggcgatattgccgatgttgtaggaccaaaaggacccgctggcccaatggga
cccccaggggagcagggatcacgtggcgaaagaggatctaagggtgacaagggaaatgtt
ggccccagaggaagagatggtgaacctggtacacctggtaaccctggaccacctgggccc
ccaggacctaatggcccccctggacttggaggaaactttgctgctcagatggccacaggt
tttgatgagaaggccggaaatgctcagatgggtgtgatgcagggaccaatgggtccgatg
ggcccccgtggacctcctggcccctctggagcacctggcccacagggtttccaaggcaac
cctggagagactggtgaacccggacctggaggtgccattggaccccgtggaccatctggg
cccccaggaaaatctggaagtgatggtgaagctggtaagcctggtaagggcggtgagcgt
ggacccccagggcctcagggagctcgtggattccctggaacccctggccttcctggcatc
aagggacacagaggacacccaggtcttgatggagctaaaggagaaggcggagctgctggt
gctaagggtgaatcaggtaccgctggtgagaatggttctcctggaccaatgggtccacgt
ggtctgcctggcgagagaggtcgtcctggagcttctggtgctgctggtgcccgtggtaat
gatggtctgcctggtcctgctggcccacctggccctgttggtccttctggtgctccaggt
ttcccaggatcccctggttctaagggtgaagctggtcccactggtgctcgcggacccgag
ggccaacaaggacaacgtggagagggtggtacacctggatcacctggaccttctggtgct
tctggtaaccctggtactgatggtattccaggagccaaagggtctgctggatctgctggt
attgctggtgccccaggtttcccaggaccccgtggcccaccaggacctcagggagccact
ggacctcttgggcccaaaggacaatctggagatcctggcatcncaggattcaaaggcgag
gctggacccaagggagagcgtggagttgctggacctctaggtcctgctgggccctcagga
gaggaaggcaaaaggggacccagaggagagcccggttctgctgggcctcttggacctcct
ggagagagaggagctccaggtaaccgtggattccctggtcaggatggtctagctggagca
aagggtgcacctggtgaccgtggtgttcctggtttgggtggacccaaaggaggaactgga
gatcctggtcgcacaggcgagcctggtcttcctggagctagaggtctcactggccgtcct
ggtgatggtggacctcaaggaaaagttggaccaagtggagcccctggtgaagatggacga
cctggtccccctggtcctattggaactcgtggtcagcctggagtgatgggtttccctggc
cccaagggagccaatggtgaacctggaaaacctggcgagaaaggtcttcttggacgcact
ggtctgagaggtttgcctggtaaggatggagagactggaccttctggtcctccgggtcct
catggtgctgttggtgagagaggagaacaaggtcagcctggtccttctggcttccagggt
ctgccaggtccttctgggccccccggagagtctggtaaaccaggtgaccagggtcttcct
ggagaggccggagctgctggtatcactggaccaagaggtgaacgtggtttccctggtgag
agaggaggtgctggccctcagggtcttcagggacccaggggtcttccaggaacagccgga
actgatggacccaagggtgctattggacctgctggagcttccggttctcagggtcctccc
ggtctgcagggaatgcctggtgagagaggagctgttggaatctctggagctaaaggtgac
agaggtgacagcggagagaaaggacctgaaggtgcttctggcaaagatggatctagaggc
ttgactggtccaattggtccacctggtcctgttggtcccaatggagcaaagggtgaaact
ggtaccgttggcccaattggctctcctggtgtccgtggtgcccctggtgatcgtggtgag
cttggtgcacctggacctgctggatttgccggacctcctggtgctgatggccagcctgga
attaagggagagcagggtgagtcaggacagaaaggtgatgctggagcatccggaccccag
ggtccatcaggagcacccggcccattgggcccaactggtattgctggacccaagggagca
cgtggagcccaaggagcccctggtgccactggtttccctggtgctgcaggaagagttggt
acacctggccccaatggtaaccctggtgctgctggtccagccggtcctgctggaaaggat
ggtcctaagggcattcgcggtgatgctggtccccctggaagagctggagatgctggacta
cgtggaccttctggttctcctggagaaaagggaatgcctggagaggatggtcctcctggt
gctgatggtccttctggtccttccggtctcgctggtcagcgtggtattgttggtctgcct
ggtcaacgtggtgaaagaggttttgcaggactcccaggcccctctggagagcctggcaaa
cagggagctcctggcagttctggtgaccgtggacctcctggtcctgttggacctcctgga
ttgagtggacccgctggagagcctggacgtgagggtaatgctggatctgatggtccacct
ggtagagatggtgctgctggtgttaagggtgagcgtggtaacactggcccgcttggagct
cctggagctcctggtgcccctggtgctcctggttccgttggcccagttggaaagcagggt
gaccgaggagagaatggcccacaaggacctgctggacccactggatctgctggagctaga
ggcatggttggaccacaaggacctcgtggtgataagggtgaggcaggagaggctggagag
agaggacagaaaggacacaggggattcactggtctgcagggtcttcccggacctcctggt
tctcccggagaccagggtgctgctggacctgctggaccatctggtgctaagggactttcc
ggacctgttggaccttctggtaaggatggttctaatggtcagcctggacccattggacca
cctggacctcgtgggcgttctggagaaactggccctgttggtccacctggtaacaccgga
ccccctggccctcctggtcccccaggccctggcattgacatgtctgcctttgctgggttg
gctcacaccgagaagggacccgatcccctgcgttatatgcgtgccgatgaggcctccagc
tctcttagacagcatgatgtagaagttggtgccacactcaagtccatcaacagccagatc
gaggacatccgcacccccgatggctcccgcaagaaccctacccgtagctgcagagacctg
aagctgtgccaccccgaatggaagagcggtgactactgggtcgatcctaaccttggcagc
agtgctgatgccatcaaagtgtactgtaacatggagactggagagacctgcttgaagccc
agcactcccaagatcccacgcaagaactggtggaccagcaagagcaagacgcacaagcac
atttggttcggcgagagcatgaacggcggattccactttagctatgctgaaaatggccag
accagcaccgccaacatccagatgaacttcctgaggctgctgtctactgaggccactcag
accatcacctaccactgcaagaacagcgtggcttacatggaccaagccacaggcaacctg
aagaaggcccttctcctgcagggatccaacgacgtggagatcaaagcagagggtaacagc
cgctttacctatggcgtgctggaagatggctgcaagaagcacacaggtcagtgggccaag
actgtgattgagtacaaaactcagaagacatccaggctgcccatcgtggacattgctccc
atggacatcggaggagaggatcaggagttcggagtggacatcggtgcagtctgcttcttg
taa
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