Triplophysa dalaica: 130407791
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Entry
130407791 CDS
T09616
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130407791 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130407791 (pcf11)
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130407791 (pcf11)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130407791 (pcf11)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130407791 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
130407791
NCBI-ProteinID:
XP_056587005
LinkDB
All DBs
Position
19:8945013..8953906
Genome browser
AA seq
1430 aa
AA seq
DB search
MSDENAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPV
EKLPVLYLVDSIVKNVGGAYLEVFAKNLVNSFICVFEKVEEGTRKSLFKLRSTWEEIFPL
KKLFALDVRVNSVDPAWPIKPLPPNVNASIHVNPKFLKPTEKVSPKPSIPQPPVQSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAVAASHHAVAPVPMVTQTVPTPQ
TKSWLPAPSEKLATRDPRLNRIGGGTTNTKEQVTQKKESLVTPSFQNTSEKRGQVATERQ
NRLDRMRIPRKDNSANEDKAKLKSVSPIGKGNLAKPREIESQHTKAAEMHKKDPRLHKQT
NDKTDSKEEVVREKKRSSEKKDRDEALKTMDHPKSRGKLPNGSLNKHERLETFIKQEIKA
KANFRKRSRSRSRSPPTHSPKRKERRSSPKRKPRSISPPSKSVKPRQLNKHAHDESFPQT
SVRDERSTAKKSVSETRRSKRPLEERAADHKDGLQQRISDHKDPKDGKRWRSGWEENKHP
KQSEQDHGRLGPQRHKTWNTNQRPTLPRIPKQHRLSVDSNLQIPEALNSASKRDLLRKAS
KRHADGEISNEEFLDVAHQINQLFQYQEERQRSDSWDDSCDEGVYSSKKKPQSITDAALS
YLEHKSKLRKTQLCRPVQKEDHLLENIQYPDEQYIEGSDMHKKPHNATKPVSDHDDPRRT
DRVLSSTLSTFRNSQSPVTERASSPAEMDMEGDISPRFESPNSVHSGTGPEDGPINLEAL
PRLDLFVEQGRSVLNLGDSPGHTPTLSSEGPAAKVNMPRQEGPNMPQRFDRYKSSQAPYD
GAPSHIREPLLDGPPRPYTPARYEGNTGGFDGSGGHGPVRFPGPRFDAPRLRFERPPFSK
THERPVRYNNQSHRPMRYAETHNMVRYGEPQGPVHFDHPMHQNRFAAPPRFDNAPMPAGP
QGFDESRFQVRPMNYDDQQGAVRFDNPTGGMPFENPLQSESIRFDGPPTMPRYDQQGPPR
FCGPNIQNQLRSQEPTMYDQSQGQGLMMNSALPPPNFNVPPMNSFGGPPQQFPMQPGVSQ
ASTFSVPGATSYRPPLSGPGGANVPQPIMGAPNQPFIPQNQLPFPPAPQFTQPEQFRQID
VNDLFSKLLMKGIIQAPQTDTTTADSPSASQTMAVPEEEEEEEQEEEDDVPDMTGFVLDD
MKQRHDSVVTKLYTGIQCYSCGMRFKASQTDIYADHLDWHYRQNRSEKDISRKVTHRRWY
YSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREFQSVKAAADVVHELCEI
CQEQFEMYWEEEEEEWHLKNAIRADEKTYHPSCYEDYKNTNSFVDCTPSPNKMLTENPLT
AFLKQEQGDEETSCSSIKEEPTEDGTDAPTVKEEVQVKLEEESETSAIIF
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaaacgcgagggaggacgcctgtcgcgagtaccagtcctcgctcgaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagcagaagagaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctgtt
gagaagcttcccgttttgtacttagtggattccatagtgaagaatgttggcggcgcatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggag
gagggtactagaaaaagtctcttcaaattgcgttccacatgggaagagattttccctttg
aagaagttgtttgcactagatgtgcgtgtgaactccgtagatcctgcctggcctattaaa
ccgttgcccccaaacgtgaatgcaagcattcatgtcaacccaaaattcttaaagccgact
gaaaaagtttctccaaaaccctccataccacaacctccggttcagagtttgacacaagag
cagctgataaggcaacagttacttgccaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgagcaaacaaaagcccagttggctgcaagtcctgctgttgca
gcaagccaccatgcggttgccccagtaccgatggtcactcaaacagttcctacaccccag
accaaatcttggcttccggcaccttcagagaagttggcaaccagagatcctagattaaac
agaattggtggtggtacaacaaatactaaggaacaagtgactcaaaagaaggaaagtctg
gttactccaagttttcagaatacatctgaaaaaagaggacaagtggcaactgaaagacag
aacagattggacaggatgaggataccaagaaaggataactctgccaatgaggacaaggct
aaattaaagtctgtgtcaccaattgggaaaggtaaccttgcaaaacccagagaaattgag
tctcaacatacaaaggctgctgaaatgcataaaaaggacccaaggctacataagcagaca
aacgacaagaccgactcaaaagaggaggttgtcagagagaagaaaagaagttcggaaaag
aaagacagggacgaagccctcaaaaccatggatcatccgaaatccagaggcaagcttccc
aacggctctttaaataagcacgaaagactcgagacttttataaaacaagaaattaaagcc
aaagcaaattttagaaaaaggtcccggtcaaggtcgcgttcaccaccgacgcattctccc
aaaagaaaagagagacgatcatctccaaagagaaaaccaaggagcatttctccaccctcc
aagtctgtaaagccgaggcagttaaacaagcatgcacacgatgagtcttttccacaaaca
agtgtaagagatgaacgaagtacagctaagaaaagtgtctcggaaacaagacgatccaaa
cggcctcttgaggaaagagctgctgatcataaggatgggttgcagcagagaatctctgat
cacaaagatccaaaagatggcaagaggtggaggagcggatgggaggaaaataaacatcct
aagcagtcagagcaagatcatggaagactgggcccacaaagacacaagacgtggaacact
aatcaaagacccaccttacctcgtatacctaaacaacatcgcttgagtgttgacagcaac
ctgcaaataccagaagcactcaattctgcaagcaagcgagatcttttgagaaaggcgagc
aaaaggcatgctgacggtgaaatatccaatgaagaattcctcgatgtagcccatcaaata
aatcaactttttcagtatcaggaggaaaggcagcgctctgactcttgggatgactcatgt
gacgaaggcgtgtactcatcgaaaaagaaaccgcaatccattactgatgccgcgctttct
tatcttgaacataaatcaaagttgaggaaaacacagctctgtcgtccagtgcaaaaagaa
gaccacttgcttgaaaacattcaatatccagatgaacaatacattgagggctcagacatg
cataagaaacctcacaatgccacaaaacctgtctcagaccacgatgatcctagaagaacc
gacagggtgctgtcaagcacgctttccactttcagaaattcccagagcccagtcacagag
cgggcatcatcgcctgctgaaatggacatggaaggagacatcagcccacgttttgaaagt
cccaacagtgtgcactctggcacaggcccagaggatggtccaataaatttggaagctctt
ccgagactcgacctctttgtggaacagggcaggagcgtattaaaccttggtgactctcca
ggacatacaccgacgctctcttctgaaggtcctgctgcaaaggtgaatatgccacgacag
gagggaccgaatatgcctcaacgatttgatagatataagagttctcaagctccctatgat
ggggcaccaagccacatcagagagccgcttttagatggtccgccaagaccttatactcct
gctcgatatgaaggcaatacgggtggatttgatggatcgggcggtcatggaccagttagg
tttcccggacctcgatttgatgctcctcgcttacggtttgaaagaccaccattttccaaa
acccacgaaagacctgtgcgatataacaaccaatcacatagaccaatgaggtatgcagag
actcataatatggtgagatatggtgaacctcaaggccctgttcatttcgatcatccaatg
catcaaaacagattcgctgctcctccaaggttcgataatgcccccatgccagcgggtcca
caaggatttgatgaatcaaggtttcaagttagaccaatgaattatgatgaccagcaaggt
gctgttagatttgataatccgacaggtggaatgccgtttgaaaacccactgcagtcagaa
tcaataagatttgatggaccgcccaccatgcctagatatgaccaacaaggccccccgaga
ttctgtggtccaaacatccaaaatcaactgagatcacaggagccgactatgtatgatcag
tcacaagggcagggtcttatgatgaactctgccctaccaccacctaatttcaatgtgccg
cccatgaactcattcggaggcccaccccagcagttccccatgcagccgggtgtttcgcaa
gcatcaaccttcagcgtgccaggtgcaacgtcatatagacctccgttatctggtccaggt
ggtgcaaatgttcctcagcctattatgggagctccaaatcagccctttataccacaaaac
cagctacccttcccacctgctccccaatttacacagcccgagcaatttaggcaaatagat
gtgaatgacctgttctcaaaacttctgatgaaaggaattatacaagctccacagacagat
acaacaactgctgactccccctcagcaagtcagactatggctgtgcctgaagaagaggaa
gaggaggaacaggaggaggaagatgatgtcccggacatgactggctttgttttggatgac
atgaaacagagacacgacagtgtggtcaccaaactctatactggaatccagtgctattcc
tgtggcatgcggtttaaagcatctcagacggacatctatgcggatcatttggactggcat
tacagacagaaccgttctgagaaggacatcagtaggaaagttacacatcggaggtggtac
tacagcctgacggattggattgagtttgaggaaattgcagatctcgaggagagggcaaaa
agtcagttctttgaaaaggttcatgaggaggttgtacagaaaactcaggaagctgcaaaa
gagagagagttccaaagcgtgaaggctgctgctgatgttgtccatgagttatgtgagatt
tgccaggaacagtttgagatgtactgggaggaggaagaggaggagtggcatctgaagaat
gccatcagagctgatgaaaagacatatcatccatcatgttacgaagactacaaaaataca
aactcctttgtggattgcacaccctcgcccaataaaatgcttacagaaaaccctttgaca
gcttttctgaagcaggagcagggcgatgaggagacctcatgctccagtattaaagaagaa
cccactgaggacggtacggatgcacccacggtaaaggaggaagttcaggttaagttggaa
gaagaatcagaaaccagtgcaattattttctaa
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integrated database retrieval system
