Triplophysa dalaica: 130408051
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Entry
130408051 CDS
T09616
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tdw
Triplophysa dalaica
Pathway
tdw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130408051 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130408051 (vps8)
Membrane trafficking [BR:
tdw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130408051 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
Clathrin
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf-RING_2
zf-RING_UBOX
ANAPC4_WD40
UBA_HOIP
EIF3I
WDR55
Beta-prop_EML_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
130408051
NCBI-ProteinID:
XP_056587442
LinkDB
All DBs
Position
2:15300910..15520836
Genome browser
AA seq
1367 aa
AA seq
DB search
MAESPDSRSLVAASSLLNVMEIEAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDT
CLVNTENIDAYSCETSSLASSDSGDRSHFKRRRKVVETNAIEHGFVLRHSVLKGISAQIV
SAADKVDSGLPTAITISSVIAVGTSHGLALVFDQNQALRLCLGTTALGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDLPTLAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGPELKHHPVTQYSLLALASLTKILL
LGLRPSLKVWLTFPYGKIQMDPTSVPLLAWQFVAVQKTINPILAFCRGDTIHFLLVKKDE
SGTIHVIKQRQFQLNCDPISLSWINSHTLVLMDSREKLRVVDRPSQEELEVVDMTELQLV
YNSSNFKSLATGGNVSQALALVGERACFQSVSSYSGQVIYLGTKSVHIMILRNWRERVDH
LLKQEKCIEALSLAWSFHEGTAKAVLGLYEDPAKRKCVVADKMVEILLQYVNHSLKKCPE
QGKIQVMEHHFQDMVPVMVDYCILLQRMDLLFNEIYPRLVENSVARGVFLESLEPYILNE
RIGCLTAPVMRDLLSYFHENGMMESVEGCLVHMDITNLDIKQVVKMCWDNQLYDAMIYVF
NSGINDYVSPMEKLFQAICPPLHEGKPLTDEHVVIGNKLLVYISCCLAGRAYPLGDISED
LVPQVKKQVFEFLIRLHSVEAAQEEEVYPFIRTLLHFDTQEFLNVLALTFEDFKNDKKAL
EYQQRIVDILLKVMLDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSP
DYDSRHTERQQVLLELMQIGGVVQFEEGHLLDLAEKAEFYQVCELMYDRKHHYDKVVDCY
LKDSLRKEELFTYIHSFLSMSDYTSDEKQSVRVKTLQHIKDLVNINPVKTTELIVVHFSD
KVQSIVTDLQDDYLVFQFLMCLLDPSSREGLNPQAVMKVGPHLNELLVDLLCQFSPQQVI
TFLKMSRDYRLEETIQITEKHKLHEATAYLLEKKGDLHGAFELLLQTLKEKMQKLFLKGP
AADKPSFEKNASEVQNPFQIVEEVLNDVIAFCQRSSYSLNLQQRETLWFYLLEAMMSPQK
LHKSPDDRHISKMLKELTMDVLNRMSSFIAPPVIIQRILQDPVYGKGNLSEIKTLIIGML
DTFNYEQTLLETTTNLLNTDLHWSLSHLRKAVSRGLYPRLDHCNICLQHYKRPQESEEEI
IIFSCGHLYHCQCLQRKETCVLGKKIYSWSCYKCMSSHGSQQADKPSSETSQSHSISLAQ
LAFLTEHTHSDSKEGAGFLNPAHPLRGSIYYNDNSQLKLSPPPLVEE
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatctccagacagccgcagtcttgtggctgcgtcctcattgctgaatgtaatg
gaaatagaggcgattgatgataaagagtttgacatcccccaagtggacacgcctcccact
ctagagagcatactaaatgagcctgaggatgaggatgagccattcattctggaggataca
tgtcttgtcaacacagagaatattgatgcctactcttgtgagacctcctctctggcaagc
tctgacagtggagaccgtagtcattttaaaaggaggaggaaagtagtggaaactaatgca
atagaacatggatttgttttaagacacagtgtgttgaaaggaatctcagcccagatagtg
tctgctgcagataaagttgattctggcctgccaacagcaatcacaatttccagtgtgatt
gcagtaggaacatcacatggtctggccttagtattcgatcagaatcaggccctgcgctta
tgtttgggaaccacagcacttggagcggagtatggggcagtctcagctctcagtattaat
catgactgtacaagacttctgtgtggctttgcaaaaggacagatcactatgtgggatttg
gccaatggaaagcttctgcgcactattacagatgcccacccacctggtactgccatacta
catgtgaagttcacagacctcccaacgcttgccgtgtgtaatgacagtggtggatcagtg
tttgaactgtctttcaggagggtgatgggaatgaggacatgtgaatcgaggtgtttattc
agtggttctaaaggggaagtttgctgtgttgagcctcttcatgctggacctgaactgaag
caccatccagtcacacagtattctctactggctttggcttcactcactaagattctgctg
ttaggactaaggccttcacttaaagtctggctgacttttccctatggcaagatacagatg
gatcctaccagtgtccccttgttagcgtggcagtttgttgcagtacagaaaacaatcaac
cccattctggctttctgtagaggagacaccatccattttctgctggttaaaaaagatgag
tctgggactatccatgtcatcaaacagaggcagtttcaactcaactgtgatcctattagt
ttaagctggataaattcccatacacttgtattaatggacagcagagaaaagctgcgtgta
gtggacaggcccagtcaggaggaactggaggtggtggacatgactgagctgcaactggtc
tataacagcagcaatttcaaatcccttgctactggtggaaatgtcagccaagcactggcc
ctggttggagagagagcatgtttccagtctgttagcagctattcaggccaggttatttat
ctgggaacaaagtccgtgcacatcatgatcttgaggaactggcgtgagcgtgtagaccat
ctgctgaagcaggagaaatgcatagaggctctttcacttgcctggtctttccatgaggga
actgctaaagctgtgctgggtctgtatgaagaccctgctaaaagaaaatgtgtagttgct
gacaagatggtggagattttattacagtatgtaaatcattctctgaaaaagtgtccagag
caggggaagattcaggtcatggagcatcacttccaggacatggtcccagtcatggtggat
tactgtatacttttgcagagaatggacctactgtttaatgaaatttaccctcggctggtg
gagaactctgttgccaggggtgtgtttttggagagtctggagccatacattttaaatgaa
aggattggctgtctcactgcacctgtcatgagagaccttctcagctatttccacgaaaat
ggcatgatggagagtgtggagggatgccttgtccatatggacatcacaaacctggatata
aaacaggtagtgaagatgtgctgggataaccagctgtatgatgccatgatctatgttttc
aacagtggcataaatgattatgtcagtcccatggagaaactcttccaggcaatttgtcct
cctctgcatgaaggaaagcctctcacagatgagcatgttgtaataggaaataaactgctg
gtatacatcagctgctgtctagcaggacgagcctatcctttaggggacatatctgaagat
cttgtaccccaggtgaaaaaacaggtgtttgaatttctgatccgtttgcattctgtggag
gctgcacaggaagaggaagtatatccattcatccgaactctcctccattttgacactcaa
gagttcctaaacgtcttggcactgacatttgaggacttcaagaatgacaaaaaggctttg
gagtatcaacagaggattgttgacattttgctgaaggtcatgttggacaattctgacttc
accccatcgcaggttggctgtctttttactttcctggcacgccagcttgccaagcctgat
aacaccctctttgttaaccgaaagctgtttgaccaggttcttgagtttttatgtagtccg
gattatgactctagacatacagaaagacagcaggtacttctggaactgatgcagattggg
ggtgtggttcagtttgaagaggggcatctccttgaccttgcagaaaaggcagagttttac
caagtctgtgagttaatgtatgacagaaaacatcattatgacaaagttgtagactgctac
cttaaagactctttaagaaaggaagagctctttacctacatacattccttcctatctatg
tcggactacacctcagatgagaaacagtctgtgcgggtcaaaacacttcaacacatcaag
gatctggtcaacattaacccagttaagacaacagagctcatagtggtacacttttcagac
aaagtgcaatctatcgttacagatctgcaggatgattatttggttttccagtttctgatg
tgcctcctggaccccagctccagagagggtctgaatcctcaggctgtgatgaaagttgga
ccacatcttaatgagcttttagtggacctgctttgtcagttcagccctcagcaagtcatc
accttccttaaaatgtctagggattaccggctagaggagacaatacagataacagagaaa
cacaagctgcatgaggctacagcctatcttctggagaagaagggggacttacacggagcc
tttgaactgctgctacagaccctcaaggaaaaaatgcaaaagcttttcctgaaaggccca
gcagcagataagcccagctttgagaaaaacgctagtgaagtccagaacccgtttcaaata
gtggaggaagttctgaatgacgtcattgctttttgtcagagaagctcttacagcctcaac
ctgcaacagagagagactctttggttttatctactggaggcaatgatgtcaccacagaaa
cttcataaaagtccagatgacagacacatttctaaaatgctgaaagagctcaccatggac
gttttaaacaggatgtcaagttttattgcaccacctgttatcattcaacgcatcctacag
gatcctgtatatgggaaaggaaatttgtctgagatcaagactctcataataggaatgctg
gataccttcaactatgaacagacattgttggagacaaccaccaatcttttgaatactgat
cttcactggtctctgtcacatcttcgtaaagctgttagtagagggctctacccccgactg
gaccactgcaatatctgcttacagcattacaaaagaccacaggaaagtgaagaggagatt
attattttcagctgcggtcacttgtaccactgccagtgtcttcagcgtaaagagacatgt
gttttgggcaagaaaatttattcatggagctgctacaaatgtatgtcaagtcatggatcg
cagcaagcagacaaaccaagctcagagacctcccaatcacactccatctctctggcacag
ctggcttttttgacagaacacactcattctgacagcaaagagggagctggatttttgaac
cctgcccatccactaagaggaagtatttattacaatgataactcccagttaaagctttct
cctccaccattggtggaagagtag
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