KEGG   Triplophysa dalaica: 130408149
Entry
130408149         CDS       T09616                                 
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tdw  Triplophysa dalaica
Pathway
tdw03440  Homologous recombination
tdw03450  Non-homologous end-joining
tdw04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:tdw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    130408149 (rad50)
   03450 Non-homologous end-joining
    130408149 (rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    130408149 (rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tdw03032]
    130408149 (rad50)
   03400 DNA repair and recombination proteins [BR:tdw03400]
    130408149 (rad50)
DNA replication proteins [BR:tdw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    130408149 (rad50)
DNA repair and recombination proteins [BR:tdw03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     130408149 (rad50)
    BRCA1-C complex
     130408149 (rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     130408149 (rad50)
SSDB
Motif
Pfam: Rad50_zn_hook AAA_21 AAA_23 AAA_15 SbcC_Walker_B SMC_N AAA_29 AAA_22 AAA_16 AAA_13
Other DBs
NCBI-GeneID: 130408149
NCBI-ProteinID: XP_056587602
LinkDB
Position
19:15764896..15791017
AA seq 1312 aa
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDAIAVQRSMQSTQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRQLRLKQATTVKSCQLELKYLKQNKDKAQEIRELLSTKEGQLASSKET
VQRIESQIDPLENRLNDIDDSLNKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGS
DEQLQEMYQNHQRTVKEKERKLVECQRELERAGRECQRMNRIKSDLLVEQGRLKLEAERH
TNNIKKRDSQVKNLASFLELEGYDRTPLREGQLQSFNTQVKERLDQDTEALNQSLRDMQE
KEAQKQRNIDDIRDKKTGLERTVELKRDMQAKKQQELKNIKSDLQRLEGSSSRLQELETE
LQKAERELDNAMQAYTVDSLKAEVIELQREKTELDQAQRKLDQEMEALNTHTTARTQMDM
LKKDKMDKEEQVRKIKSRHNEDLVSLLGHFPNKRQLEDWIHTKSREINTTRDRLSKLNKE
LASGEQKRSHYTAEIKRKEEQLSSYEERLFNVCGSQDFESDLGRLQDDLEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAEHQDVVNDMQSKLRLVPDKLKNTEQDLK
RKEHRRDEMMALKPIRQSIMELQEKELPELRNKLQSSNRDIERLKGDIEELETLLSTLTS
EEDTAKACLQDISLMDRYQHDLKDVERKIAQHAARLQGVDLSRNMQQVSQEKQETQHRLD
TTCSKIELKRKLIQDQQEQIQVLKSRVNEIRGEKLQISSDMQKRQQLEEQCVEFTTEIQT
LHRDIREAKDQLSPLAASLEKLQQDKQDLAERRRHRQEEGQEKINAIKEKVKNLTLIERE
ITRYIEEGKDSYKEEKETELQEVDKQLHAAEKQREKINKDMGNFRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKRDVLLKEMGNMQVLQLRNERREVDRKLEELKKNRSVALGRQKG
YEDEILRFRKELNENQYCRAEDIYRDKMIEMRTTELANKDLDIYYKALDQTIMRFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDAALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELMGRSNYVEYFYRIKKNQDQCSEITKCSITTLNSYLR
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcaaagatagaaaagatgagtattcttggtgtgaggagttttggagtggaagataaa
gacaaacaagtgatatcattcttcagtcctctgacagtcctggtgggacctaatggagct
ggaaagacgaccatcatcgagtgtctcaagtacatcacttcaggagactttcccccagga
agcaaaggaaacacttttgtccatgatcccaaagatgcccatgagacggacgtgcgagcg
caaatcagactccagtttcgagatgtaaatggtgatgccatagctgtccagagatccatg
caaagtacacagaagggcaagaaaactgagttcaaaactcttgagggtgtcattaccaga
atcaagcacggggagaaagtaagtctgagctctaaatgtgctgaaatagaccgcgagatg
atttcagcgctgggcgtctctaaagccgttctcaaccacgtcatcttctgtcaccaagag
gagtccaactggcctttgagtgaaggcaaagccctcaagcagaagtttgatgagatcttc
tcagccacgaggtacatcaaagtattagagaccctgcggcagctgaggttgaaacaggca
accacagttaaatcctgtcagctggaactcaaatatctcaaacagaacaaagataaggct
caggagatcagagagctgctgtccactaaagagggtcagctggcttcctccaaagagact
gtccagcgcattgaaagtcagattgacccgctggagaatcgacttaatgacatagatgac
agcctcaacaaagtgatgaagttggacaatgacatcaaagctcttgacagcaggaagaaa
cagatggaagatgataaccgtgaactagaggaaaagatggagcaggtgtttcaaggttct
gatgagcaacttcaggaaatgtatcagaaccatcagcgtactgtgaaggagaaggagcgg
aagctagtggagtgccagcgtgagctagagcgagctggacgagagtgtcaaagaatgaac
cgcatcaaatccgacctccttgttgagcaaggtcgcctaaaattggaggcagaaaggcac
acaaataacataaaaaagagggacagccaggtgaagaatttggcatctttcctggagctg
gagggctatgatcggacccctcttagagaaggacagctccagagcttcaacacacaggtc
aaagaaagactggatcaggacacagaagctctcaaccaaagcttgcgtgatatgcaagag
aaggaggcacagaagcagcgaaacatagatgatattcgtgataagaagacaggcctggag
agaactgttgagctgaagagagacatgcaggccaagaaacagcaggaactgaagaacatc
aagtctgatctgcagagactggagggctcatctagcagactgcaggagctggaaactgag
cttcagaaagcggagcgtgagcttgataacgccatgcaggcgtatacagtggacagtctg
aaggctgaagtgattgaactacaaagggagaaaactgaactggatcaggcccagcgcaaa
ctggatcaggagatggaagcgctcaacacgcacaccacagctcgtacacagatggacatg
ttgaagaaggataagatggataaagaagagcaagtgaggaagatcaagtcaagacacaat
gaagatctagtgtctctgttaggacactttccaaacaagagacagctggaagactggatc
cacacgaaatccagagagattaacactactagagatcggctcagcaaactaaacaaagaa
ctggcgtctggagaacagaagaggagtcattacacggcagagatcaagcgtaaggaagaa
cagctgagcagctatgaggagaggctgtttaatgtgtgtggaagtcaagactttgagtca
gacctcggcagactgcaggatgatctcgagaaatgctccaaacagagagccatgctggcg
ggcgccacagctgtgtacagtcagttcatcagtcagctgacggaggagggcgaaccgtgc
tgtcccgtgtgtcagcgcgtcttcccatcagaggccgagcaccaggacgtcgtcaacgac
atgcagtccaaactgcggcttgtcccagacaagctgaagaacacagaacaggacctgaag
aggaaagagcacagacgggatgaaatgatggcactaaagccaatcagacagtctatcatg
gagcttcaggagaaagagctgcccgagctcaggaataaactccagagttcgaatcgcgac
atcgagaggctgaaaggagacattgaggagctggagacactgctgtcaacactcacgtct
gaggaagacacagccaaagcctgtctgcaagacatctcgctcatggatcgctaccagcat
gacctgaaggacgtggagaggaagatcgcccagcatgcggccagactgcagggagttgac
ctcagtcgcaacatgcagcaggtcagccaggagaaacaagagacccaacaccgcctggac
acaacctgcagtaagatcgagcttaagaggaaactgatccaggaccagcaggagcagatc
caggtcttgaagagcagagtcaacgagatccgcggagagaagcttcagatctccagcgac
atgcagaaacgtcagcagctggaagagcagtgcgtggagttcaccaccgagatccagacg
ctccatcgagacatccgggaggcgaaggatcagttgtctcctctagctgcttctctggag
aaactccagcaggacaaacaggacctcgctgaacggaggaggcacagacaagaggaaggc
caggagaagataaacgcgattaaggagaaagtaaaaaacctgactctaatcgaaagagag
atcacaaggtacatcgaagagggcaaagacagctataaagaggaaaaagaaaccgagcta
caagaggtggacaaacagctgcatgcggcggagaaacaacgagagaagattaataaagac
atgggcaactttcgccaagacattgacactcagaaggttcaggagcgctggctccaggat
aacctgaccttacggaaacgggtggaagagctgaaggaggtgtccaggaaacgtgacgtt
ttgctcaaggagatgggcaacatgcaggtcctgcaactgcgcaacgagcgtcgagaagtg
gaccgaaagttagaggaactgaaaaagaaccgcagcgtggctctcggtcgacagaagggc
tacgaggacgagatcctgcgtttccgcaaggagctcaacgagaaccaatactgccgagcc
gaggatatctacagagacaaaatgatagagatgagaacgacagagctggccaataaggac
ctggatatttactacaaagccctagaccaaacaatcatgaggtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttgtggaggagcacatacagaggacaagacata
gagtatgtggaaatccgctctgatgtggatgagaacgcatctgctggcgtcaaaagacgg
acgtataattatagagtggtcatggtgaaaggagacgcagctttggacatgcgaggacgc
tgcagtgctggacaaaaggttcttgcgtccctcataattcgactggctttggctgagacg
ttctgtctgaactgtgggattctggcactggatgagcccaccaccaatttagacagagag
aatattgagtctttggcacacgcccttgtggagatcatcaagagccgatctcgccagcgt
aacttccagctgctggttatcactcatgatgaagactttgtggagctcatgggacgatcc
aactatgtggagtatttctacaggatcaagaagaaccaggatcagtgctcggagattaca
aaatgtagcatcaccactcttaactcatacctgcggtga

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