Triplophysa dalaica: 130408461
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Entry
130408461 CDS
T09616
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03082
ATP-dependent chromatin remodeling
tdw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130408461 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130408461 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tdw01009
]
130408461 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130408461 (smarcb1b)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130408461 (smarcb1b)
Protein phosphatases and associated proteins [BR:
tdw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130408461 (smarcb1b)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130408461 (smarcb1b)
SWI/SNF complex
130408461 (smarcb1b)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130408461 (smarcb1b)
PBAF complex
130408461 (smarcb1b)
SWI/SNF complex
130408461 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
130408461
NCBI-ProteinID:
XP_056587980
LinkDB
All DBs
Position
19:5901955..5908609
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFFMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVDERKKV
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPNSS
HHLDAVPSSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYSTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGEADQWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPGW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacatttggacaaaaaccaataaaatttcaactagaggaagatggg
gacttttttatgataggttcagaggtaggcaactatcttcgtatgttcagaggctctctg
tacaagcggtacccgtcgctatggagacgtctcgcctccgtggatgagaggaagaaggtt
gtagcatcatctcacgccaccagtgtgaccctgctgaaggcatcggagtgtgaagaaatc
ttcgagggcaatgatgagaagtacaaggcggtgtctatcagcacagaacctccagcgtat
ctcagggagcagaaggcaaagaggaacagtcagtgggtgcccacattacccaacagctcc
catcacttggatgcagtgccttcctccaccaccatcaaccgaaatcgaatgggacgtgac
aaaaaaaggactttcccattatgtttcgatgaccatgaccctgctgttatccatgaaaat
gcttctcaggctgaagttctggtgcccatccgtctggatatggagatcgatgggcagaag
ctgagagatgccttcacttggaacatgaatgagaaacttatgactccagagatgtttgct
gagatcttgtgtgatgacctggacctgaatcctctcgctttcgtccctgccatcgcctct
gctattagacagcagatcgagtcttactccaccgacagcattctggacgagcagacggac
cagagggtcatcatcaagctaaacatccacgtaggaaacatctcgctggtggaccagttc
gagtgggacatgtcggagaaggaaaactcaccagaaacgtttgctttgaagctctgctct
gagctgggcctcggaggagagttcgtcaccacaatcgcctacagcatccgaggacagctc
agctggcaccagaggacgtacgccttcaggtctgatttcagtgagaaccctttacccacg
gtggagattgctattaggaacacaggcgaagccgaccagtggtgtccactgctagagact
ctgacagatgcagagatggagaagaaaattagagatcaagacagaaataccagacgcatg
cgacgacttgccaacactgcccctgggtggtag
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integrated database retrieval system
