Triplophysa dalaica: 130409075
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Entry
130409075 CDS
T09616
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04510
Focal adhesion
tdw04512
ECM-receptor interaction
tdw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130409075 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130409075 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130409075 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tdw00535
]
130409075 (col9a3)
Proteoglycans [BR:
tdw00535
]
Extracellular matrix (ECM) proteoglycans
Others
130409075 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130409075
NCBI-ProteinID:
XP_056588679
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Position
20:complement(14991940..15012676)
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AA seq
678 aa
AA seq
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MAVLSALQLLFLCQLLTSSFAQRPGPRGSPGLPGPPGPPGKDGIDGKDGPAGLAGKPGPK
GKAGKPGAAGSPGIPGLPGVDGLTGPDGPAGKDGPPGAIGERGPLGPPGPPGRGRPGAAG
LSGADGLPGGPGPQGPPGPEGLPGLSGQPGKDGPPGLPGTLPEGSGDLLCPSICPPGPPG
PPGMPGFKGHTGHKGDKGEVGKDGELGDQGPPGPPGIPGTVGLQGPRGLRGVPGPVGPVG
DRGLPGFRGKPGIAGVIGKTGDSGEKGPQGFKGPKGEIGKTGPKGVSGGVGPKGEPGMPG
RDGKDGTQGLDGEKGDAGRPGVSGEKGPNGLPGLQGKAGSKGAMGEVGKPGEMGKNGPSG
EPGIPGEIGIPGERGEAGPRGVAGGIGLLGNAGPQGVKGFQGVNGALGDPGLPGPTGIRG
GFGERGPLGARGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGPKGVAGPQG
ETGPRGAPGRTGTMGLQGEQGFPGVAGKTGVPGKLSSEQHIRELCGSMIDDQIAQLAANL
RRPLAPGAVGRPGPSGPQGRPGEVGSIGHPGARGPPGYRGLPGDLGDSGPRGDFGEPGDK
GPVGKAIEGPAGDQGEQGLPGVNGVVKDGRDGAPGDPGEQGEAGRTGRTGHQGSPGICDT
SACQGAVVHGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgttgtcagctcttcagcttctatttctgtgccagctgttaacatcatctttt
gcccagaggccaggtccgcgtggttcacctggactgccagggccacctggacccccaggg
aaagatggcattgatggtaaggatggtcctgctggacttgctggaaagcctgggccaaag
ggaaaagctggtaaaccaggggccgctggaagcccaggaatacccggcctccctggagtg
gatggtttgacaggtcctgatggtcccgctggaaaggatggaccaccaggagcaataggc
gaacggggacctctcggaccaccaggaccccctggcagagggaggccaggagctgcaggt
ctttctggagctgatggtcttccaggtggaccaggacctcagggtccgcctggacctgag
ggtcttccaggactttctggtcagccaggcaaagacggaccacctgggcttccaggaact
cttcctgaaggtagtggagacctgctgtgtccatccatctgtcctccaggtcctcccgga
cctcctggaatgcccggatttaagggtcatacaggtcataaaggagataagggagaggtg
ggaaaagatggagaactgggcgatcagggtccgcctggtcctcccggaatcccgggtaca
gtgggtttacagggtccccgtggtctgaggggtgtgccgggtccagtagggccagtgggt
gatagaggattgcctggcttcagaggaaaacccggcattgctggtgtcattggaaaaacg
ggtgactctggtgaaaagggacctcaaggttttaaagggcccaaaggagagattggaaaa
acgggccctaagggagtttcgggaggtgtaggacccaaaggcgaacctggcatgccaggt
cgagatgggaaggacgggactcaaggcctggatggtgaaaagggcgatgctggacgacct
ggggtatctggtgagaaaggacctaatggattgcctggtttgcaaggaaaagctggtagc
aaaggagccatgggagaagttggaaaaccgggggagatgggaaaaaacggaccatctgga
gagccaggtatccctggcgagattggcatccctggagagagaggagaggctggacccaga
ggtgtagctggtggcattggactacttggaaacgctggtccacaaggtgtaaaaggattc
cagggtgttaatggtgctcttggggatccaggtttacccggcccgactggaatcagaggc
gggtttggtgagaggggtcctcttggggctagaggtcctaaaggagacatgggtgtggcc
ggaagtgacggtttaccaggagagaatggagagcctggtccctatggccctgtcgggcag
aaaggagagtctggtaagcgtggtgaactcggacctaaaggagttgcaggaccacaggga
gaaacaggacctagaggtgcacctggaagaacgggaacaatgggattacaaggagagcaa
ggttttcctggagttgctgggaagactggtgttcctggcaaactgtccagtgagcagcac
atcagggaactgtgtggatcaatgattgatgatcaaattgctcagctggccgcaaaccta
agaagacctctggcccctggtgctgtgggacgccccggaccttctggacctcaagggagg
ccaggagaagttggatccattggtcaccctggagcacgtggtccaccaggttatagagga
ctgccaggagatcttggcgattctggtccaagaggggattttggtgagccgggtgataag
ggtccagttggtaaagccatcgaagggcctgctggagaccagggtgaacaaggtttgcct
ggtgtgaatggcgtcgttaaagacgggcgtgatggagcacctggagatccaggagagcaa
ggagaagccggaagaacaggacgcacaggacaccaaggatcacctggaatctgtgacacg
tcagcatgccagggtgctgtggttcatgggaagtcttccaatcccaagaaccactaa
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