Triplophysa dalaica: 130409370
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Entry
130409370 CDS
T09616
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tdw04515
]
130409370 (clstn1)
Cell adhesion molecules [BR:
tdw04515
]
Cadherins
Cadherin related
130409370 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
CDC45
Laminin_G_3
Laminin_G_2
TylF
Cadherin_C_2
PRIMA1
EphA2_TM
TMEM132_C
Zip
PFF1_TM
FAM176
Motif
Other DBs
NCBI-GeneID:
130409370
NCBI-ProteinID:
XP_056589282
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All DBs
Position
20:3325531..3359475
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AA seq
979 aa
AA seq
DB search
MRIGGVTLKPFASAVGLLLGLLCAADAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIA
LDKDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEAVIKAKDKLDCELQ
KEHTFTIQAYDCGEGADGANMKKSHKATVHIQVNDVNEYSPVFKEKSYKATVIEGKKYDS
ILKVEAVDADCSFQFSQICSYEIVTPDVPFTIDKDGNIKNTEKLNYSKERMYKLTVTAYD
CGKNRASEDVLVKVNIKPTCKPSWQGFNKRIEYEPGTGSLALFPSMRLETCEEPLTSIQA
TIMLETNHIGKGCDRDTYSEKSLHKLCGASAGTVELLPAPSNSANWTIGLPTDNGHDSDQ
VFEFNGTQATKVPEGLVSTSLKEPFTISVWMRHGPGGMEKETILCNSDKAEMNRHHYSLY
VHNCRLVVLLRQEPVESENYKPAEFHWKLDQVCDKEWHHYVMNIEFPAVTLFVDGATFEP
FLVTEDYPLHASTIETQLTIGACWQDLSGHDNDTEPLTGGSARMSQFFRGNLAGLMIRSG
KLENKKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSLSLEGDDIESFEKVMQHISY
LNSRQFPTPGIRHLRIATTVKCFNEETCISVPDAEGYVMVLQPEEPKISLSGIDHFARGA
AEFESTEGVALFPELRIVSTITREVEVEAETEAEGEDEPTVQETVVSEEIMHNLDTCEMT
VVGEDLNGDHESLEVDLAQIQQRGLEMSSSNVGMIITGVNTMANYEQVLHLIRYRNWHTE
ALFDRKFKLVCSELNGRYISNEFKVEVNVIHTANPMDHANNAMVQPQFINQVQHASMDLS
GHNLVNTHQASVVPSAATVVIVVCVSFLVFMIILGVFRIRAAHQSTMRDQENGKENEMDW
DDSALTITVNPMETYEDQHSSEEEADEDDEEDESEDGEEEDDITSAESGSSEDEAGEPED
QQSSSRQQQLEWDDSTLPY
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcggcggggtaacgttaaaacctttcgcgtctgcagtcggtctgctcttggga
ctattatgcgcggcggatgcggctaaagtaaataagcacaagccatggattgagaccacg
tatcatggtatcgtgactgagaatgacgacaaggttctcttggatcctccactgatagcc
ttggataaagacgccccgctgcgctatgcagagagttttgaggtgaccttcaccaaagaa
ggggagatctgtggctttaggattcacgggcagaatgttccgttcgaggcggtggtgctg
gataaatccactggagaggcagtgatcaaggccaaggacaaactggactgtgagctgcag
aaggagcacaccttcaccattcaggcgtatgactgcggagagggagcagatggagccaac
atgaagaagtctcacaaggctaccgttcacatccaagtaaatgacgtgaacgagtactct
ccagtgtttaaagagaagtcctacaaagccacagtaatcgagggcaaaaagtacgacagc
atcttgaaggtggaggccgtggatgccgactgctcgttccagttcagtcagatctgcagc
tatgagatcgtcacccccgatgtgccatttactatcgacaaggatggcaacatcaagaac
acagagaagctgaactacagcaaagagcgcatgtacaaactgaccgtgactgcgtatgac
tgcggtaaaaaccgcgcttccgaggacgtccttgtcaaagtcaacatcaaacccacctgc
aaaccgagctggcaaggatttaataaaaggattgaatatgagcctggcacaggaagtctt
gccctgtttcccagcatgcgcctggaaacctgcgaggagccactaacctccattcaggcc
accataatgctggagacgaatcacatcggcaagggctgcgacagagacacatactctgag
aagtccctgcacaagctctgtggtgccagcgctggcactgtggagctgctgcccgctccc
agcaactctgccaattggaccattggcttgcccactgacaatgggcacgacagcgaccag
gtgtttgagttcaacggcacccaggccacgaaggtccccgagggtttggtgagcaccagc
ctgaaggagcccttcaccatctcggtgtggatgagacatggacctggaggcatggagaaa
gaaaccatcctctgcaattctgacaaagccgagatgaacaggcaccactattctctttat
gtacacaactgtcgtctggtggtgctgttgcgtcaggaacccgttgaatctgagaactac
aaacctgcagaattccactggaaacttgaccaagtgtgtgataaagaatggcatcactac
gtgatgaacatcgagttcccggccgtgactttgtttgtggatggtgcaacatttgagcct
ttcctggtcacggaggattaccctctgcatgcctccacgatcgagacccagctcaccatc
ggcgcctgctggcaagacctctcaggacatgacaatgatacagagcccttgacaggtggc
agcgcccgcatgagtcagttcttccgtggcaacctggccggactcatgatccgttctgga
aaactggagaacaagaaggtcatcgactgtctttacacatgtaaggaaggtctggatgtg
cagcttccagaagaagtggcctcggccgtgaaggtggagtttaaccccaatcagtcctct
ctgagcctggagggagatgacatcgagagctttgagaaggtcatgcagcacatctcttac
ctaaactcccggcagttccccacaccaggcatccgccatctgcgcatcgccaccacagtc
aagtgcttcaatgaggagacgtgtatctccgtgcccgacgctgaaggttacgtgatggtt
ctccagccagaggagccaaagatcagcctcagtggaattgaccattttgcgcgcggggcg
gccgagtttgagagcacagagggtgtcgcgctgttccccgagctgagaatcgtcagcacc
atcacccgcgaggttgaggtggaagctgagaccgaggctgagggagaggatgagcctacg
gtgcaagagacggtagtgtctgaggaaatcatgcataacctggatacctgtgagatgact
gtggtcggagaggatctgaacggagatcatgagagcttggaggtggatctggctcagatc
cagcagagaggtctggagatgagctcttccaacgtgggcatgatcatcacaggtgttaac
actatggcaaactatgaacaggtgctgcacctgattcgctacaggaactggcacactgag
gctctgtttgacaggaagttcaaactggtctgctcggagctcaacggccgttacatcagc
aatgaatttaaagtggaggtcaacgtgatccacacagcaaaccccatggatcatgctaac
aacgctatggtacaacctcagttcatcaaccaggtccagcatgcttcaatggacctgtca
ggacacaacctggtcaacacccatcaggcctcagtcgtccccagcgccgccaccgttgtt
atcgtggtgtgcgtgagcttcctggtgttcatgatcattctgggtgtgttccgcatccgc
gccgcacatcagagcaccatgagggaccaggagaacggaaaagaaaacgagatggactgg
gatgactcggcactcaccatcactgtcaaccccatggagacttatgaggaccagcacagc
agtgaggaagaagcagatgaggatgacgaagaggacgagagcgaggatggcgaggaagaa
gatgacatcaccagcgcagagtcaggcagtagtgaggacgaggccggagagcctgaagac
cagcagagctccagcagacagcagcagctggaatgggacgactccaccctcccctactga
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