Triplophysa dalaica: 130409472
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Entry
130409472 CDS
T09616
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130409472 (pdzrn3a)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130409472 (pdzrn3a)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130409472 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
zf-C3HC4_2
PDZ_2
Sina_ZnF
zf-C3HC4
zf-RING_UBOX
zf-TRAF
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_5
Prok-RING_4
zf-rbx1
U-box
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130409472
NCBI-ProteinID:
XP_056589451
LinkDB
All DBs
Position
20:complement(10899225..10925600)
Genome browser
AA seq
971 aa
AA seq
DB search
MGFDLDRFEGTVEPDLICKLCAKVLEEPLTTPCGHVFCAACVLHWLSKVNSCPDQCQKMS
PKELNHVLPLKNLILKLDIKCDHRDRGCNRVMKLKHLSEHIEICDFSPVRCRNEGCDALL
SLKDVASHMREECEHRPVELCTDGCGLMLSLKEKSDHRCFEALKTNSGFLQVKVLDLERE
LKRRCLRFSRRERSLLSKLSALHCELHMTALRFQKKITEYKSRIDALSNTRIPFNEEEET
VTINVTLHRASGCLGFNIIGGWSCEGHEGDSSNGIYISKVLENGAAEKSGLHIHDRIIEV
NGMSLSQATHDQAVEAFQTAKEPIEIRILRRKEPKTLVPVMSVDSSTQTNITLKYLNHIE
AMVELPSPSLPLGMAVLCHMTRHDSPTQPDFFVGTQEAIESRGFEYEIHPDGVTAKNGRI
QERDQIIKINGVDIQSHDGESKNVTLLAARPQNQGNCSLEDRNHLVDDLRIDMSKHQHHR
AMEFTARMLKESRHEDDGGTTDTATIRSNLHEKDSGVGRTDESTRNDESSEQDILGDDVT
SVCDTLPGNHKKFNYGQDTIESRDTHLSHDSSLFVDNGDGRSFLDSPGMVCKHFRELLEL
KCTANGSNPCGYQEPDAKLYGENVSLDSEELDVQMLNEELLKIELECLRIIQAHSLRTGE
AEPSSNDSGTKHLTSVGKVHQDGKQADKESSSAYNTGESGRSIPPREELSPDFQSMVTKD
KGINSPVHGRNSSKPCPKHPLSPIQEASSKSHSPQGNPEVLNGPKTMQNVKKTPGKCQSL
YIPAHAQHYKSYMHLIQQKSAVEYVQSQISLASLCKNPTPCFSRPKMEWKVKICSNGTRY
ITKRPTRDQLLKERASRIREERFSMTTDDDAASDLKLGRYWNREERKQHIVHAKEQRQRR
ELIKQGRIELGGARDDKKTPDIIQLSHKKMTRRRNKRILDNWMTIQELLTHGTRSTDGTK
LYNSFLSVTTV
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgatctagatcgtttcgagggtaccgtagagccggacctcatttgtaaactg
tgtgccaaagttctggaggagcctctgaccactccgtgtggacatgtgttctgcgctgcc
tgcgttctccactggctctccaaagtcaacagctgccccgaccagtgtcagaagatgtcc
cccaaagaactgaaccacgtcctgcccctgaagaacctaattctcaaactggatattaaa
tgcgaccatcgcgaccggggctgtaacagagtgatgaagctcaagcatctttcagagcac
attgagatctgtgacttctctccggtgagatgcaggaatgaaggatgcgacgcgctgctc
agtctgaaggacgtcgcgtcacacatgcgggaggaatgtgaacacagaccggtggagctt
tgtacggatggatgtggactgatgctcagcctcaaagagaagtcggaccaccgctgtttt
gaggcgctgaagacgaacagcgggtttcttcaggtcaaagtgctggatttggagagagag
ctgaagcgccggtgcttgaggttcagcaggagggagagatcgctcctttccaaactttct
gcgcttcactgcgaacttcacatgacagcgttgagatttcagaagaaaatcaccgagtac
aagagcaggattgacgcgctgtcaaacactcgcatccctttcaacgaggaagaagaaacg
gtgaccatcaatgtgaccctccacagagcgtcaggatgtctcggatttaatatcattgga
ggatggtcatgtgagggacatgagggcgattccagtaatgggatctatatatcaaaggtt
ttggagaatggagcagcggaaaagagtggactgcacattcatgacaggatcattgaggta
aatggaatgagcctttcccaggccacacacgatcaagccgtagaggcctttcaaacagcc
aaagagcccattgagattcggatattgcgcaggaaagaacccaagactcttgtgccggtc
atgagtgtggacagcagtactcaaaccaacattactttaaaatatcttaatcatatagag
gctatggtcgagcttccctctccatcattgccattgggtatggctgtgctctgtcacatg
acaagacatgattcacctacccaaccagacttcttcgtcggcacacaggaagccattgaa
agtagaggatttgaatatgagattcatccagacggtgttacagcaaaaaatggcagaatc
caggagagagaccagattatcaagatcaatggtgtggacatccagagccacgatggggaa
agcaagaacgtgaccctcctagcggctcgacctcaaaatcagggcaattgctcgctggag
gatagaaaccacctcgtagatgacttgcgcattgatatgtcaaagcatcagcatcatcgg
gccatggagttcactgcaagaatgctgaaggagagcagacatgaagatgatggaggtact
actgatacggcaactatacggtccaaccttcatgagaaagacagcggtgtggggcgcaca
gatgagagcactcgtaatgatgaaagctccgagcaggacatcttgggtgacgacgtgact
tctgtttgtgacactcttccgggaaaccacaaaaaatttaactatggccaagacactata
gaaagtagagacacacatctaagtcatgactcctccttgtttgttgacaatggagacggc
agaagtttcctggattcgcctggcatggtgtgcaaacacttccgggaactgcttgaactg
aaatgcacggcgaatggaagcaatccttgtggataccaggagcctgatgccaagctttac
ggagaaaatgttagtttggacagtgaagaactggatgttcagatgctcaatgaggaactg
ctgaaaatcgagctagagtgtctacgcatcatacaggcacatagtcttcgaactggagaa
gctgaaccatcgagcaatgattctggtacaaagcacttgacaagtgtgggaaaagtccat
caagacgggaagcaagcggacaaggaaagctctagtgcttacaacaccggagaaagtggt
cggagtatccctcctcgtgaagaactttctcctgactttcagagtatggttaccaaagac
aagggaataaattctcctgtgcatggacgcaactcatccaaaccatgccccaagcatccc
ctttctccaattcaagaggccagctccaaaagtcactctcctcaagggaatccagaggtc
ctgaatgggccaaaaacaatgcagaatgtcaagaagaccccagggaaatgtcaatcccta
tatatcccagcccacgcccaacattacaaaagctacatgcaccttatccagcaaaagtca
gctgtcgagtacgtccagagtcaaatcagcttagccagcctttgtaagaacccaactccc
tgtttctccaggcccaagatggagtggaaggtaaaaatctgcagcaacggaacacggtac
atcaccaaaagacctacaagggatcagctgctgaaggaacgcgcatcgcgcattcgtgaa
gaacgctttagcatgacaactgatgacgatgcagcgagcgatctcaaactgggtcgatac
tggaacagggaggagcgcaagcagcacatagtacatgcgaaggaacaacggcaaaggcgg
gaactgatcaagcagggtcgtattgagctgggtggtgctagggatgacaagaagacacca
gatattattcagctcagccacaaaaagatgacgaggagaaggaataagaggattcttgat
aactggatgaccattcaggagctgctgacacatggtacaaggtcaacggatgggacaaaa
ctatataattcctttctttcggtgactacagtgtaa
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