Triplophysa dalaica: 130409940
Help
Entry
130409940 CDS
T09616
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130409940
09123 Folding, sorting and degradation
03018 RNA degradation
130409940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130409940
03041 Spliceosome [BR:
tdw03041
]
130409940
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130409940
mRNA cycle factors
Stress granule specific factors
130409940
Spliceosome [BR:
tdw03041
]
Complex C
Other components
Complex C specific factors
130409940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
RRM_10
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
130409940
NCBI-ProteinID:
XP_056590147
LinkDB
All DBs
Position
21:complement(18134917..18138316)
Genome browser
AA seq
504 aa
AA seq
DB search
MTSFVGGSYCAAGVPRDQVASLFVGDLHPEVSELILHQTFSPFGPIQSVRVCRDRVTRRS
LRYGYVNFVNLANAESAMDNLMCQDLLGRPMRIMISQRDSTLRTTGVGNIFVKGLASSID
GARLHDSFSLFGKILSCKVVCDANGSKGYGFVHFATFEAAEKAIKALDGMLLDDQLVSIG
HFKTFEERRVEPQVMAQDNERRYPGVSLYVCNLPYSFREQQLYRAFSPFGSIVSAKLMME
AGRSRGFGFVSFSTLEDATRAASVMNGRVVDGRALRVTLSRHNEQKTQTEKQDSSSESLP
AGRFTSAVPQVQKRPDVHPENQPPLQHIGRQTAACVLAQGESLRPPMPVVPWDGINTRPP
RLLVSLVLLEYWASQAELDVLLPMRLLGLPAPSDDTEVITHLSRIPKILPDSATAPVQTQ
AQQLVNSSHRSPSTWGRWFWMTLNRCSESRSLSCPTSWSIVNLQTTRRHLFFRQMDLWQN
TPAEQDQREALMNTSKLFIVNNCT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgttcgtcggaggaagctattgtgcggctggcgtaccgagggatcaggtcgcc
tcgttgttcgtgggggaccttcatccagaagtgtccgagctcatcctccatcagacgttc
agcccgttcggtccgatccagtccgtgagggtctgcagagacagggtgactcggcggtcg
ctgcggtatggttatgttaactttgttaacctcgccaatgcagagagtgccatggacaac
ctgatgtgccaggaccttctgggcagacccatgcggatcatgatctcccagcgtgattcc
acgctgaggacgactggtgtcgggaacatcttcgtcaagggtctggccagcagcatcgat
ggtgcccgccttcatgacagcttctcgctttttgggaagatcctgtcctgcaaggtggtc
tgcgatgcaaacggatccaaaggttatggattcgtccactttgccacctttgaagcggca
gagaaggccatcaaagcgcttgatggcatgttgttggacgaccagctggtgtccattggc
cactttaaaacctttgaagagcgtcgtgttgagccgcaggtcatggctcaggacaatgag
aggcgctacccgggggtgagtctgtacgtgtgtaatctgccctatagcttcagagagcag
cagctgtacagagcgttctcaccctttggaagcatcgtcagtgccaagttgatgatggag
gccggacgcagccgagggtttggatttgtcagcttctccaccctcgaagatgcgaccagg
gctgcgtcggtcatgaacgggcgcgtagttgacggcagggcgttgcgggtcactctgtct
cgtcacaatgagcagaagacccagaccgagaagcaggacagcagcagtgaatcacttcct
gctggacggtttacgtctgctgttcctcaagttcaaaaacgccctgacgttcaccctgaa
aaccagccgccgctccagcacatcggtcgacagacagcagcgtgcgtcctcgctcagggt
gagagtctccgcccacccatgcctgtcgtcccgtgggatggcattaatactcggcctccg
cgcctgctggtctctctggtgctcctggaatactgggcaagccaagcagagttggatgtg
ttgcttcctatgcgacttctcggcctgcctgcacccagtgatgatactgaagtcatcact
cacttatctcggattcctaaaattctgcctgatagtgcaacagctcctgtccaaacacaa
gctcaacagctggttaactcttcacatcggtcaccatccacgtgggggcgctggttctgg
atgacgttaaacagatgttcggagtccagaagcctgagctgccccaccagctggagcatc
gtgaatctacagacgacacgcaggcatttgtttttcagacaaatggatctatggcagaac
actcccgcggaacaagaccaacgtgaagctttgatgaacacgtcgaagctgtttattgta
aataactgtacataa
DBGET
integrated database retrieval system
