Triplophysa dalaica: 130410015
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Entry
130410015 CDS
T09616
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04510
Focal adhesion
tdw04512
ECM-receptor interaction
tdw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130410015 (col2a1b)
04518 Integrin signaling
130410015 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130410015 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130410015 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130410015 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
130410015
NCBI-ProteinID:
XP_056590316
LinkDB
All DBs
Position
21:20427062..20499759
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AA seq
1485 aa
AA seq
DB search
MMVWTHSWTLRFFIALLAVVSCQEEDDQDPGSCMQDGQRYSDKDVWKPESCRVCVCDTGT
VLCDEIVCEELKDCPKPEIPFGECCPVCGADRPSSSGSPGVKGQKGEPGDITDVVGPRGQ
AGPTGPPGEQGPRGERGDKGEKGSPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLGGNFAS
QMAGGFDDKSSAQMGVMQGPMGPMGPRGPPGPNGSPGPQGFQGNPGEAGEPGSAGSMGPR
GPSGPSGKPGDDGEAGKPGKSGERGPLGPQGARGFPGTPGLPGIKGHRGYSGLEGAKGES
GAVGAKGEAGSPGESGAPGPMGPRGLSGERGRPGPSGAAGARGNDGLPGPAGPPGPVGIV
GANGFPGSPGTKGEAGPTGARGPEGAQGPRGESGVPGAPGPSGLSGNSGTDGNPGAKGSV
GAPGISGSPGFPGPRGPPGPQGATGPLGPKGQSGDSGLAGFKGEAGPKGEIGNAGPQGAL
GPAGEEGKRGPRGEPGALGPIGPSGERGAPGNRGFPGQDGLAGPKGAPGERGAPGGSGPK
GASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGSLGPQGARGQPGIM
GFPGPKGANGEAGKAGEKGLAGAPGLRGLPGKDGETGAGGPPGPAGSAGERGEQGQPGPS
GFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGAGPAGLQGPRGLP
GTPGSDGAKGGVGPAGLSGAQGPPGLQGMPGERGTPGVSGPKGDRGDNGEKGPEGAPGKD
GARGLTGPLGPPGPAGPNGEKGESGPMGPSGAAGSRGGPGDRGETGPPGPAGFAGPPGVD
GQPGIKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGPPGEKAEPGED
GPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRGPPGPV
GSPGLTGPAGEPGREGNPGSDGPPGRDGAPGIKGDRGDTGPAGSPGAPGGPGAPGPVGPT
GKQGDRGEAGPKGPAGPSGPAGARGMPGPQGPRGDKGEAGDTGDRGQKGHRGFTGLQGLP
GPPGQPGDQGATGPAGPSGARGPPGPVGPYGKEGTNGSPGPIGPPGPRGRSGENGPAGPP
GNPGPPGPPGPAGPGIDMSAFSGLPQPEKGPDPLRYMRADQAAEGTPQHDAEVDATLKSL
NNQMENIRSPDGTKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCNMETGET
CVYPKPSNIPRKNWWSSKGTERKHVWFAEAMNGGFHFSYGDDNLAANTASIQMTFLRLLS
TEASQNLTYHCKNSIAYMDEANGNLKKALLLQGSNDVEIRAEGNSRFTYTVLQDDCTKHT
GQWGKTVIEYKSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgtggacgcattcgtggactttacgtttctttattgcattattggctgttgtg
agctgtcaggaggaggatgaccaggatccaggtagctgtatgcaggacggacagcgctat
agtgacaaagatgtgtggaaaccggagtcgtgtcgtgtttgtgtgtgtgacacgggcacg
gtcctgtgtgatgaaatcgtctgcgaggagctgaaggactgtcccaaacccgagatcccg
tttggggagtgctgcccggtctgtggcgctgaccggccgtcctcctccggatcgccaggt
gtgaagggacaaaagggggaaccgggagacataacagatgtggtggggccgaggggacaa
gccgggcctacaggaccgccgggagaacaaggaccccggggagagagaggagacaagggc
gaaaagggaagtcctggtccccgtggcagagatggtgagcctggcatccctggaaacccc
ggaccccctggacccccggggccaaacggaccccctggccttggtggaaactttgcctct
cagatggccggtggatttgatgataaatcttcagcacaaatgggcgtgatgcagggaccg
atgggaccgatgggaccacgaggaccaccaggccccaatggatctcctggcccacaagga
tttcagggtaaccccggagaggccggagagcccggatcagccggctcaatgggtccccgt
ggcccttccggtccctcaggaaaacctggagatgatggggaagcaggtaaacctggtaaa
agtggtgaacgtggacctcttggacctcagggagcccgtggatttccaggaacaccaggt
ctacctggaataaagggacatcgaggttattcaggtcttgaaggtgctaaaggagaatct
ggagctgttggagctaaaggtgaagctggctcgcccggagagagtggggctcctggacca
atgggtcctcgcggtctgtctggtgaacggggacgtccaggaccctcaggagctgctggc
gctcgtggaaatgatggtttgcccggtcccgctggtcctccgggtccagtaggcatagtc
ggcgctaatggtttcccaggatcccctgggacgaagggtgaagcaggtcccactggtgcc
cgtggacctgagggagcacaaggacctcgtggagagtcgggcgtcccgggagctccaggg
ccttctggactgtccggtaactccggtactgacggcaaccccggcgccaaaggatcggtg
ggcgctcctggtatttccggttctcctggttttccgggtcctcgcggccctcctggacct
cagggagcaaccggtccactcggaccaaagggacagtctggtgattcaggtctggctggg
ttcaagggtgaagcgggtcctaaaggagagattggtaatgctgggcctcaaggtgccctg
ggtccggctggagaggaaggtaagcgaggacccagaggagagcccggcgctctcggaccc
atcggaccatctggagagagaggagctcctggtaacagaggttttcctggacaagacggt
ttggcaggtccaaagggcgctccaggtgagcgtggagctccaggaggatcaggtcctaaa
ggagccagcggtgatcccggacggcctggagaacccggtctgcccggtgccagaggtctg
acgggacgtcccggtgatgctggcccacaagggaaagttggtccatctggagctcctggt
gaagatggccgtcccggatccctcggccctcagggtgcacgtggtcagcctggaatcatg
ggattccccggacccaagggtgccaatggtgaggctgggaaagcgggagagaaaggactc
gccggagctcctggtttacgtggtctgcctggtaaagatggtgagacgggtgctggggga
cctcctggaccagctggctctgcaggagaacgaggagaacagggtcagcctggaccttct
ggcttccaggggctgcccggtccccctggtccccctggagaaggaggcaaacctggtgat
cagggtgttccaggagaagctggcgctgctggggccacaggacctcgaggtgagcgtggg
ttcccgggagagagaggaggtgcaggaccagcaggcctccaagggccccgcgggcttcca
ggaacacctggatctgatggagcgaagggtggtgttggtcctgctggtctttcgggtgct
cagggaccaccgggtctgcagggaatgcctggagagagaggaacacccggtgtgtctgga
ccaaagggtgacagaggagacaatggtgagaaaggacctgagggagcacctggaaaagat
ggtgcaagaggtttaactggtcctctcggtcctcctggtcccgctggacccaacggtgag
aagggtgaatctggacccatgggaccctctggagctgccggtagccgcggaggtcctggt
gacagaggagagaccggtcctcctggtcctgctggttttgctggtccacctggtgtagat
ggacagcctggtatcaaaggggaacagggtgagggtggacagaagggtgacgctggtgct
cctggacctcagggaccctctggagctccaggtcctcagggaccaactggtgtttctgga
ccaaagggggctcgtggtgctcaaggacctcctggtgctacgggtttccctggagctgcg
ggtcgagttggaccaccgggtcccaatggtaacccaggtcccgctggtcctgctggtcct
ccaggtaaagatggaccgaagggtgtgcgtggtgatggtggtccacctggaagaccgggt
gatgctggtttacgtggaccggccggtcccccaggcgagaaggcagaacccggtgaagac
ggtcctcctggtccagatggtccatcgggtccagcaggtctggctggacagcgtggtatc
gttggacttccaggacagcgtggtgaaagaggttttcctggtttacctggaccttctggg
gaacccggcaaacaaggggctcctggtggacctggagaccgcggacctcctggacctgta
ggatctcctggactcacgggacctgctggagaacctggtagagagggaaatccaggatct
gacggtcctccaggccgagatggtgctccaggaattaagggtgatagaggtgacaccggt
ccagcaggctctcctggcgctcctggtggtcctggtgcacctggtccggttggacccacg
ggtaaacagggggacagaggagaggccggaccaaaaggacctgctggaccttctggaccc
gctggagctcgaggaatgcctggaccacaagggccgcggggagataagggagaggctggc
gacacaggcgatagaggacagaaaggacacagaggattcaccggtcttcagggtctgcca
gggcctcctggccagcccggtgaccagggtgctactggacctgccggaccttccggagca
agaggtcccccaggccctgttggtccatatggaaaagagggaacaaatggctcgcctgga
cccattggaccccctggacctcgtggtcgttctggcgagaacgggccagccggtccccct
ggaaaccccggacccccaggtcctcctggcccagcagggcctggtattgacatgtctgca
ttttctggtctgcctcaacctgagaagggtccagatccattgaggtacatgagggcagac
caagcggcagaaggaacaccacagcatgacgcagaggtagatgctactctgaaatccctg
aacaaccagatggagaacatccgcagccctgatggtactaagaagaaccctgcccgcacc
tgtagggatctcaaactctgtcatcccgattggaagagtggtgagtactggatcgatcca
aaccagggctgcacggttgatgctatcaaggtgttctgcaacatggagacgggtgagacc
tgtgtgtatccaaagccctcaaacataccacgcaagaactggtggagtagcaagggtaca
gaacgaaaacatgtgtggtttgcagaagccatgaatggtggattccacttcagctatgga
gatgacaatctggcagcgaatacagccagtattcagatgaccttcctgagacttctgtcc
acagaggcttcgcagaacctcacgtaccactgcaagaacagcatcgcctacatggacgag
gccaacggcaacctaaagaaggctttgctgctgcagggctccaatgatgtggagatcaga
gctgagggtaacagccgcttcacgtacactgttctccaggacgactgcacgaaacacaca
ggacaatggggaaagacggtgatcgagtacaagtcacagaagacttcacgtctacccatc
gtggacatcgcccctatggacatcggaggagcaaaccaggagtttggtgtggatgtggga
gcagtgtgtttcttatga
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integrated database retrieval system
