Triplophysa dalaica: 130410193
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Entry
130410193 CDS
T09616
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130410193 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
130410193 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130410193 (lsm4)
03041 Spliceosome [BR:
tdw03041
]
130410193 (lsm4)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130410193 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
130410193 (lsm4)
Spliceosome [BR:
tdw03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130410193 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
130410193
NCBI-ProteinID:
XP_056590711
LinkDB
All DBs
Position
21:14112650..14115000
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AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKPQGKGRGGGPGRGGAPGRGVFGG
RGRGIPGTGRGLQQDKKPGKPQGVKNQH
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgttatcgttattaaagacggcacagaaccacccaatgctggtggagttaaag
aatggtgaaacatacaacggtcacctggtcagctgtgacaactggatgaacatcaatttg
agagaagttatttgcacctcacgggatggagataagttttggaggatgccggaatgttac
atcagaggaagcaccattaaatacttaagaatccctgatgagatcatagatatggtgaaa
gaggaagtagtgtcaaagggacgtggccggggtggaatgcagcagaacaaaccacaagga
aagggcaggggaggcggacctgggagaggaggcgcaccagggagaggtgtgtttggaggc
cgtgggagaggtattcccggtactggacgtggactgcaacaagacaaaaagcctggaaaa
ccacaaggtgtcaaaaaccaacactag
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