Triplophysa dalaica: 130410624
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Entry
130410624 CDS
T09616
Symbol
pbrm1
Name
(RefSeq) protein polybromo-1
KO
K11757
protein polybromo-1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130410624 (pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130410624 (pbrm1)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130410624 (pbrm1)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130410624 (pbrm1)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
130410624 (pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130410624
NCBI-ProteinID:
XP_056591381
LinkDB
All DBs
Position
21:15338001..15357220
Genome browser
AA seq
1623 aa
AA seq
DB search
MGSKRRRATSPSSSVSGGDFEDSQTPSIPSTSRKRRRITNIPTVDPIAVCHELYNTIRDY
KDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKMEEYDDVEQLTADFQLLF
NNAKTYYKPETPEFKAACKLWDLYIRTKNEFVQRGDYDEDDDDGEDAQENPAGSTEEESV
SSLKEVLTQLLDAVLTYTEHGRVISELFQRLPSKVQYPDYYAIIKEPIDLKTIAQRIQMG
YYKSVNHMAKHIDLLAKNAKCYNEPGSQVFKDANTIKKIFAQRKMELEHAEPVKTSIRIR
NRRFAQGDRLSSITTALQYGSESEEDAILTGSIHYDEGESEAESIHSSMDVSNPIFQLYE
AVRGSRNSQGQLLAEPFFQLPSRKDYPNYFQQITHPISLQQIRSKMRNNEYDSVEQMESD
LNLMFENAKRYNVPNSQLYKRMLKLQQIFQMKRRELMRRYDEDGDSMLSSTLSDGGTTKR
KSYKKNTKKNRMKALYASVAEAREMGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLRTI
DHNIRSDRYPSEDSMMENMKLMFRNARHYNEEGSQVYNDANILEKILREKRRDLGPPPDD
DDIISPKMKIRKSGISPKKSKYLTPLQQKLNELYESVKNYTDKRGRRLSAIFLRLPSRAE
LPDYYVAIKKPIDMEKIKGHMLSNKYQDVDALVEDLVLMFNNACTYNEPESLIYKDALVL
HKVLLETRRDLDCAEDARVPDVARLIQELVRNLFVSVLGHQDDEGRCYSDSLAEIPAADP
NNPEKPPLNFEIIRANVDKGRYRRLDVFQDHMFEVLEKARRLHRTDSEIFEDSVELQQFF
IRIRDELCKNGEILLSPALSYTTKHLHSDVEKEKKEKLPKEYEEDKLKREEEKKEAEKSE
DSAGGGWQGVLQRNFSQDCSFKDNMYHVGDYVYVEPTEPNLQPHIVCIERLWQDDAGEKW
LYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKIPVSKILGKCVVMFVKEYFKLQPDNFR
PEDIFVCESRYSAKTKSFKKIKMWTMPLSSVKFVPREVPLPVVRVASMFAPKLDSEKPPE
VPEDGKAAPSVIDKEREDVTMEISNGEPGCQYYEQLCYNDTCLKVGDCVYIRSHVLVRNR
VGRIEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEESCPMTCIGGKCTV
SSFKDFLSCRPTEMPEEDVLLCESRYIESDKQMKKFKGLKRFSMSAKVVEDEIFYFRKLI
VPQKEPSPLLDKKIEELEAKFADMTDEELEELGDDDGDGSDGHMPQLQTSLSGDMDMLHY
APPQSTPKSIKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQHPDFSFGELSRLVGTEWR
SLEATKKAEYEERAAKVAEQQERERAHQQNPRAGTPVGALMGVVPPPTPMGMLSNSMTPM
AGMMGSYRPVGNMINKVGMPPHPMMVPALPLHPLWGRPGMPYLGMNGMTPGSTGNTYGNQ
MGVMNSGQQAPPPYPGQVGQPAFQQPSTPIFVAPPPKPQRLLHSEAYLKYIEGLSADSTT
VSKWDQTLSVRRKDVRLSKEQESRLPSHWLKSKGAHKTMADALWRLRDLMLRDTINIQQT
YNI
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgaagcgacggagagccacttctccgtccagcagtgtgagcggaggagatttt
gaggacagtcagaccccgtccataccttcaaccagccgaaagaggagaagaatcacaaac
attcccactgttgaccctattgctgtgtgtcatgagctgtacaacactatcagagactac
aaggatgatcagggtagaatgctttgtgaacttttcataagagcaccaaaaagaaggaat
cagccggattattatgatgtggtgtctcaacctattgacatgatgaagatccagcaaaag
ctgaagatggaggagtatgatgatgttgagcagctcacagcagactttcagctccttttc
aacaatgccaagacgtattacaaaccggagactccggagttcaaggcggcgtgtaaactt
tgggatctgtacatccgtaccaaaaatgagtttgtgcagcgtggggactatgatgaagat
gatgacgatggtgaagatgcacaagaaaaccctgcagggtccaccgaggaggagtccgtc
tcaagccttaaggaagttctcacgcagcttctggatgctgtgctgacatacacagaacat
ggacgtgtcatcagtgaactgttccagagacttccctctaaagtgcaatatccagattat
tatgctattattaaggaaccaatagatctgaagaccattgcacagagaatacagatggga
tactacaaaagcgtaaaccatatggcaaaacacattgacctgttagccaaaaatgccaaa
tgctacaatgaacccggatcccaagtatttaaagatgcaaacactatcaaaaagatcttt
gcacagaggaagatggaacttgaacacgctgagccggttaaaaccagcatcagaatcagg
aataggaggtttgcacagggagatcgtctctcttctatcactacagctctacagtatggt
tcagagagtgaagaagacgccatactaactggctcgattcattatgatgagggcgagtct
gaagccgagagcatccactccagcatggacgtgagcaatcccatcttccagctgtatgag
gcagtacggggcagcaggaacagtcaagggcaactcttagccgaacccttttttcagctg
ccctccaggaaagactaccctaactactttcagcaaatcacccatccgatctcactccaa
cagataaggagtaagatgaggaataatgagtatgatagtgtggaacagatggaatcagat
ctcaacctgatgtttgagaacgcgaaacgctacaacgtccccaactctcagctctacaag
cgtatgctaaagctgcagcaaatattccagatgaagagaagagaactgatgaggagatat
gatgaagatggggacagcatgctctcatccactctttctgatgggggcacaaccaaacgc
aaaagctataagaagaacacaaagaagaaccgaatgaaggctctatatgcttccgtggca
gaggctcgagagatgggaacagggcgaaggctctgcgatctcttcatggtcaaaccctca
aagaaagactacccagattactacaagatcatactggagccaatggacctgaggaccata
gaccacaacatccgctctgaccggtaccccagcgaggactcaatgatggagaacatgaag
ctgatgttccgtaacgctaggcactataatgaagagggatcacaggtttacaatgatgcc
aacattctggagaagattttgagagaaaagcgaagggacctcggacccccgcctgatgat
gatgacatcatttcacccaagatgaaaattagaaagagcggcatctctcctaaaaagtcc
aagtacctaacgcctctgcagcagaaactcaacgaactttacgaatctgtcaagaactac
accgacaagcgtggccgtcgtctcagcgccatcttcctccgtctcccatcccgtgccgag
cttcccgactactatgtggccatcaagaaacccatagacatggagaagatcaagggtcac
atgctatccaacaaatatcaggatgttgacgcgctcgtggaagatttagtgttgatgttc
aacaacgcttgtacttacaacgagcctgaatctctcatctataaagacgcattggtgctt
cacaaagttcttttggagaccaggagagacctggattgcgctgaagacgcccgtgttccg
gatgtagcgagacttattcaggaactggtacgcaatctttttgtgtccgtgcttggtcac
caggacgatgaggggcgttgctatagcgactcgctggcggagattcctgccgccgatccc
aataatccagagaagccgccattgaactttgagatcatcagagcaaacgtggataaagga
cgttataggcgactagacgtgttccaggatcacatgtttgaagtcttggagaaagccaga
cgtctgcataggacggattcagagatctttgaggattctgtggagctccagcagttcttc
atccggatcagagatgagctgtgcaagaacggagagattctcctgtcgcccgccctcagc
tacaccactaaacacctgcacagtgatgtggagaaggagaagaaagagaagctgcccaaa
gagtatgaagaggataaactcaagagagaggaggaaaagaaagaggctgagaagagcgag
gattcagctggtggtggatggcagggagtccttcagcgtaacttcagtcaggactgcagc
tttaaagataacatgtaccatgtgggagattatgtgtatgtggagcccacagaacctaac
ctgcagccacacatcgtatgcatagagcgcctctggcaggatgatgcaggagagaagtgg
ctttatggctgctggttctacagacccaatgaaacatttcacctggccacacgcaaattt
ctggaaaaggaagttttcaaaagcgactactacaacaaaattcctgtcagtaaaattttg
gggaaatgtgtcgtaatgtttgtaaaggagtatttcaaacttcagccagacaacttcaga
cccgaagacatttttgtttgcgagtctcgctactctgcaaagaccaagtctttcaaaaag
atcaagatgtggacgatgcccctgagctctgtcaagtttgttccccgtgaagtgccatta
cctgtggtccgtgtggcctcgatgttcgcccccaaactggacagcgagaagcctcccgag
gtgccggaagatggcaaagctgcaccttctgttatagataaagagagagaggatgttacc
atggagatcagtaatggagaaccaggttgtcagtattatgagcagctctgctacaatgac
acgtgtttaaaagtgggagattgcgtctacatccgatctcatgtgctcgtgcgcaaccgt
gtgggcagaattgaaaagatgtgggtgcgagatggagctgcctattttttcgggcccatc
tttattcacccggaggagaccgagcatgaacccaccaagatgttctataagaaagaagtt
tttctcagcaacctggaggaatcctgccctatgacttgtataggagggaagtgcacagtg
tcttcttttaaagactttctgtcatgccggccgactgagatgccggaggaggacgtactg
ctgtgcgagagccgctacattgagagcgataaacagatgaagaagttcaaagggctgaag
cgtttctctatgtctgccaaagtcgttgaagatgaaatcttctacttcagaaagctcata
gttcctcagaaggagccttccccactgttggataagaagatcgaggagctggaggccaag
tttgctgatatgacggacgaagagctggaggagctgggtgatgatgatggagacggctct
gatggtcacatgcctcagcttcagacttctctgagtggcgacatggacatgctgcattac
gccccaccacagtccacgccgaagtcaataaaggggctgtcaaagaaggaaggggcaaag
aggaagatcaacatgagtggctacatcctcttcagcagcgagatgagggccgtcatcaag
gcccagcaccctgacttctctttcggagagcttagtcgactggtgggcacagagtggaga
agcctggaggccacgaagaaagccgaatatgaagagcgggcagctaaagtagcagagcag
caggaacgagaacgggcgcatcagcagaacccgagagcaggtaccccagtaggggcactc
atgggggtggtgcctcccccgacccctatggggatgcttagcaacagcatgacgcctatg
gcaggcatgatgggtagctacaggcctgttggtaacatgattaacaaggtcggcatgcct
cctcatcccatgatggtgcctgccttacccctccaccctctgtggggtaggcctggtatg
ccatatctgggtatgaatggaatgactccgggatccacaggaaacacttacgggaatcag
atgggcgtgatgaactcaggccagcaggctcctcctccgtacccgggtcaggttgggcag
ccagctttccagcaaccctccacacccatatttgtagctcctcctcccaaaccccagcgt
ctcctacattcagaggcatatctgaagtatatcgaaggtctgagtgccgactccactact
gtgagcaaatgggaccaaacactttctgttcgcaggaaagatgtgcgtctctcaaaagag
caggagagccgtctcccctctcattggctgaagagtaaaggagcccacaagactatggcc
gacgctctgtggcgactgcgggacctgatgcttcgcgacactataaacattcaacagaca
tacaacatctag
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