Triplophysa dalaica: 130411290
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Entry
130411290 CDS
T09616
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130411290 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130411290 (smfn)
03009 Ribosome biogenesis [BR:
tdw03009
]
130411290 (smfn)
Messenger RNA biogenesis [BR:
tdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
130411290 (smfn)
Ribosome biogenesis [BR:
tdw03009
]
Eukaryotic type
Pre-60S particles
RNases
130411290 (smfn)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
PBCV_P4
DUF6274
Motif
Other DBs
NCBI-GeneID:
130411290
NCBI-ProteinID:
XP_056591759
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Position
22:16558653..16561426
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AA seq
259 aa
AA seq
DB search
MRAHMWSAACLSGFRLLTRACVSSQRVRRYPLESSSHSFSLFSPCASVLTRVLMSKRSES
RKMSKLMAQRMVWVDLEMTGLDIDKDHIIEMACIITDPDLNIIAEGPNLIINQPDELLDS
MSDWCKEHHGESGLTRAVRDSDITLQQAEYEFLSFIRQHTPPGQCPLAGNSVHADKKFLD
KYMSQFMRHLHYRIIDVSTIKELCRRWYPEEFQLTPHKKGSHRALEDIQESIRELKFYRA
NVFKPVLEEKKRKSSLEWR
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcgcacatgtggagcgcggcttgtttatctggtttcagactcctgactcgagcg
tgcgtgtcatcacagagggtccgccgatacccactcgagtcatcttcccacagcttctcg
ctcttcagtccatgtgcctctgttctcaccagagtcttgatgtcaaagcgatcagagagc
cggaagatgtcaaagctcatggcgcagcggatggtctgggtggatttggagatgacgggg
ctggacatcgataaggaccatattattgagatggcttgtatcattaccgaccccgacctg
aacatcatcgcagagggccctaatttgataataaatcaaccagatgagctccttgacagc
atgtcagactggtgtaaagagcatcatggcgagtcaggattgactcgggccgtgagagac
agtgacatcactcttcagcaagcggagtatgagttcctgtccttcattcgccagcacacg
ccacccggccagtgtcctcttgcagggaactctgtccatgcagataagaagtttttggat
aagtacatgagtcagttcatgcgacacctgcattatcgcattatagacgtgagcacaatt
aaagagttgtgcagacgatggtatcctgaagagttccagctcacgccacataaaaaagga
tctcatagagcgttggaggacatccaagagagcattagagagctgaagttttacagagcc
aatgttttcaaacctgttttggaggagaagaagagaaaaagtagtctagaatggagataa
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