Triplophysa dalaica: 130411337
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Entry
130411337 CDS
T09616
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130411337 (chd1)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130411337 (chd1)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130411337 (chd1)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
130411337 (chd1)
SLIK complex
130411337 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
130411337
NCBI-ProteinID:
XP_056591861
LinkDB
All DBs
Position
22:complement(3460548..3480848)
Genome browser
AA seq
1823 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSRSGSSQSGSGSDSGSQSD
SDSEKSKEKNDQGNKIDGAAFWKSNPSILTVQRTAMLRKQQLQQQQQQQQQQLHHQPQST
SNSGSDEDSSSSDSDDDSKSKSKGSGSDSDSGSDSGSGSGSSESSAEGGKSEESVSDYEP
SHKVKSRKPPNKAIARNGKKSKPPKQQASPSSSDDEDDYKKALAGPRRQATVNVSYKEDE
ELKTDSDDLVEVVGEDVPPPEEDEFETLERVMEMRIGRKGATGAVTTVYAVEADGDPNAG
FDPNRQSGDVQYLIKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKEQEKKKWLKTA
SPEDVEYLNCQQELMDDLHSQYQIVERIIGEEALNSPDFEETQTEVVYFCCGFNLTGHSN
QKSAAGYPDYLCKWQGLPYFECSWEDGALIGRKFQKCINDYMSRNQSKSIPFRECKVLKQ
RPRFVPMKKQPPYIGGEGLELRDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFL
NYLFNEHQLYGPFLLVVPLSTLTSWQREILLWAPQMNVVVYLGDINSRNMIRTHEWMHLQ
TKRLKLNILLTTYEILLKDKSFLGNVSWAFIGVDEAHRLKNDDSLLYKTMMEFKSNHRLL
ITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEEDHGKGRDSGYTSLHKELEPFLLRRVKK
DVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCN
HCYLIKPPEENEFYSRQEGLQHLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDIL
AEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVV
IFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRM
DTTGKTVLDTGAAPSSSTPFNKEELSAILKFGAEELFKEQEGEEQEPQEMDIDEILKRAE
TRENDPGPSTVGEELLSQFKVANFSMMDDEEIDMDTDRHNKNWDSIIPEEQRRRLEEEER
QKELAEIYLLPRMRKCAKQSSFNGNEGRRSRNRRYSASDSDSTSERKRPKKRGRPRTIPR
ENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSEHDLRRLAETVHNGCVRTL
KENPCGPERTSGGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYI
IPCHAKAAHFDIEWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQA
KQLQTRADYLIKLLSKDLAKKEAQKQSGTANSRKRKPRGKKNKAVKPKVDEVMNSLSSAP
PSDKSSEDEDDKDEEEKEPAVVKAPNRRGGVTERTVKDEEEEEEEEESSSEEEEPEIKEQ
EEEIKKVVKKEIKKEKKEEGRDSKEREPKEKEIKPDPVHREEESPTEKAVDVKAEVREKA
ADTPVPVSAGGENIPASEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEH
TRQCLIKIGDHITECLREYTNPELIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQE
NAQTLEQNTSTVNTQSAKHSDTERIKESQQDDSSRDSSSSDRHHSSRYHEHGKDRHPSDS
YRKSTDSRKRPYPSFSNGKDHRDRDHYRERDRPDSRYYSDAKHRKVDDHLSSRDHRSDGS
SKESRAQSEHRSHSEHRSGSDYTHHKSSRDYRYHSDWQIDHRVSGSGQRSPREQRSPYDS
RSPFEYSSDHRSTPERVWSSRKT
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtcagtaacagcagtggagagtcaagtaactca
gatgatgagtctgggtcaggatcaggatctggttccagttccagcagcagcagttccagc
agcagccgatcaggaagcagccagtcgggaagtggctcagattcagggagccaatcagac
tctgactctgagaagtccaaggagaaaaatgatcaaggcaataaaattgatggagcggcg
ttttggaaatccaaccccagtatactgacggtgcaaaggacggccatgctcagaaaacaa
cagctacaacaacaacaacagcaacagcagcagcagctccatcatcagccacagagcact
tctaacagcggctcagatgaggactcctcaagtagtgactcggacgatgactcaaagagc
aagagtaaagggtctggatcagactctgattcgggttcagactcgggttcaggaagtggt
tcgtctgagtcctccgcagagggggggaagagtgaggagtctgtttccgactatgagccc
agtcacaaagtcaagagcagaaaacctccaaacaaggcaattgcaaggaatggtaaaaag
agtaaacctccaaagcagcaggcctcgccctcttcctctgatgatgaggacgattataag
aaagctctggccggcccgcgacggcaggccacggtcaacgtcagctacaaagaggacgag
gaactgaagaccgattcagatgacctggtggaggtggttggagaggacgtcccaccacca
gaagaggatgagtttgagacactcgagagggtgatggagatgaggattgggcggaaagga
gcgacgggagcagtaacaacagtttacgctgtggaggcagatggcgaccccaacgccgga
tttgaccccaacagacagtcaggagacgtgcaatacttgatcaaatggaagaactggtcc
cacattcacaacacctgggagacggaggaaaccctcaaacaacagaacgtgaagggcatg
aagaaactggacaacttcaagaaaaaagagcaagaaaagaagaaatggctgaaaacggct
tcgcctgaagatgtggaatacctcaactgtcagcaggaactgatggacgacctgcattca
caataccaaattgtagagcgaatcattggtgaggaagctctcaactctccagattttgag
gaaacgcagacagaggttgtttatttctgctgtggttttaatcttacaggacattcaaat
cagaagtcggccgcaggttatccagattacttgtgtaaatggcagggcctgccgtacttc
gagtgcagctgggaggatggagcgctcatcggcagaaagtttcagaagtgcattaatgat
tacatgagccgcaaccagtctaaatccatcccgttcagagaatgcaaggttttaaaacag
agacctcggtttgtacccatgaagaaacagcctccctatatcggtggagaaggtctggag
ctgcgggattatcaactggacagtctgaactggatggcccattcctggtgcaaagggaac
agttgtatcctagcagatgaaatgggcttgggtaaaaccatccaaaccatcagtttcctg
aattacctgtttaatgagcatcagctgtacggacccttcctgttggtggtgccgctgtcc
acacttacatcctggcagagagagattctgctctgggctccacagatgaatgttgtcgtc
tacctgggtgatatcaacagcagaaacatgatccggacacatgaatggatgcatctgcag
accaaacgcttaaagttgaacatccttctcactacttatgaaattctgctcaaagataag
tcatttttagggaacgtgagctgggcgttcattggtgtagatgaagcccataggctgaag
aacgacgactcgcttctctataagaccatgatggagttcaagtctaaccacagactgctc
atcacaggcacacctctgcagaactccctcaaagagctctggtctctactgcatttcatc
atgcccgaaaagtttcactcatgggagatgttcgaagaggatcacgggaaaggcagagac
tcgggctacaccagccttcataaagagctagagccttttctgctgcgtcgagtcaagaag
gacgtggagaaatctctgcctgccaaggtggagcagatcctcagggtggagatgagcgcc
attcagaaacaatactacaagtggatattgacacggaactataaagctctgagcaaaggc
actaagggaagcacatcaggctttctgaacatcatgatggagctgaagaagtgctgtaac
cattgctacctcatcaaaccccctgaagaaaacgagttctacagcagacaagagggacta
cagcacctgattcgcagcagtgggaaactggtgcttttggataaactgctggttcggctg
aaggaacgaggtcaccgcgtgctcatcttctctcagatggtccggatgctggacatcctg
gccgagtacctgaagtccaggcagttcttatttcagagactggacggttctataaagggt
gaaatgaggaagcaggcactggatcattttaacgccgaaggttcagaggacttctgcttc
ctgttgtccacgcgagcgggcggtctgggcattaatctggcttctgctgatacagtggtc
attttcgactctgactggaaccctcagaatgacttacaggcccaggccagagctcacagg
atcggacagaagaaacaggtgaatatataccgtctggtgacaaagggctcagttgaggag
gagattattgagagagccaagaagaaaatggtattggatcatctggtgattcagaggatg
gacactacagggaagacggttcttgacacgggtgctgctccttccagttccactccgttc
aacaaggaggagctgtctgctatcctgaagtttggtgcagaagagctctttaaagagcag
gagggagaagagcaggaaccacaggagatggatattgacgagatcctgaagagagcagag
accagagagaatgaccctggaccatcaactgtaggagaagaactcctctcacagtttaag
gtggccaacttctccatgatggacgatgaggaaatcgacatggacacggatagacacaat
aagaactgggattcaattatccccgaggagcagcggaggagactggaggaggaggagcga
cagaaggagcttgcagagatctatttactgccccgcatgaggaaatgtgctaaacagagc
agctttaatggaaatgagggcagacgcagccggaacaggcgatactcggcttcagacagt
gactctacctcagaaagaaagcggcccaagaaacgaggaagacctcgaaccattccacga
gagaacattaagggcttcactgatgcagagatacgcaggtttatcaaaagctacaagaag
tttggtggtcctttagaaagactggatgctatcgctcgtgatgctgagctggtggataaa
tccgagcatgatcttcggcggctggctgagactgttcacaacggctgtgtgaggacgctg
aaggagaatccctgtggacctgagagaacctcgggaggcaggagagggaaggttaaagga
cccaccttcaggatctcaggggttcaggtcaatgccaaactggtgatctctcacgaggag
gagctggcacctctacacaaggccatacctgctgaccctgaagagagaaagaggtatata
atcccgtgtcatgcaaaggcagctcattttgacattgagtggggaaaagaggacgactcc
agtctgctcatcggcatctatgagtacggttatggcagctgggaaatgatcaagatggac
ccggatctcaacctcacccacaagctccttccagatgatcctgataagaagccccaggcc
aaacagctacagacacgagccgactacctcatcaagctattgagcaaagacctggccaag
aaagaagcccagaaacagtctggcacggcaaactcgcggaagaggaagccaagggggaag
aaaaataaagctgtgaaaccgaaggttgatgaggtgatgaacagtctgtcctcagctcct
ccgtcagataagagctctgaagatgaggatgacaaagacgaagaggaaaaggaacctgct
gtggtgaaagcgcctaacaggagaggaggcgtcaccgagcgaacggttaaggacgaggag
gaggaggaggaagaagaagagtcgtcgtctgaggaagaggagcctgagattaaagagcag
gaggaggagataaagaaggtggtgaaaaaagagatcaaaaaggagaagaaagaggagggc
cgggacagcaaagaacgagaaccaaaagagaaggaaatcaagcccgatcccgttcacaga
gaggaagagtctcccacagagaaggctgtcgatgtgaaagcagaagtgcgggagaaggcg
gcggacacacctgtgcctgtctctgcaggaggagagaatattccagcatctgaggagtct
gaagaactggaccagaagaccttcagcgtgtgtaaggaacgtatgaggccggttaaggca
gcactaaagcagttggatcgtccagagaagggcctgtctgagcgagagcagcttgagcat
acacgccagtgcctgatcaaaatcggagatcacatcacagagtgtctccgagaatacacc
aaccctgaactgatcaaacagtggaggaaaaatctttggatatttgtttccaaattcaca
gaatttgatgcaagaaaactgcataaactctataagcacgccatcaagaagagacaagaa
aatgctcagacattggaacagaacactagcactgtaaatacacaaagcgccaaacattca
gatacggagcggataaaggagtcgcagcaggacgacagcagcagagacagcagcagctct
gacagacatcactcatctcgctaccatgaacacggcaaagatcgtcacccatccgactcg
tacaggaagagtacagactctcggaagagaccgtatccctccttcagcaacggcaaagat
caccgagatcgagaccactacagagagcgagatcgaccggacagcagatattacagcgac
gccaagcacaggaaggtagacgatcatctctccagcagagaccaccggtcagacggcagt
tcaaaggaatccagggctcaatcggaacaccgctctcactccgagcaccgctccggctcg
gactacactcaccacaaatcctcaagggactaccgataccattcggactggcagatagac
caccgggtttcaggcagcggccagcgctcgccccgggagcagcgctcaccgtatgactct
cgctcgcccttcgagtactcgtccgatcacagaagcacaccggaacgggtctggagcagc
cgcaagacataa
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integrated database retrieval system
