Triplophysa dalaica: 130413200
Help
Entry
130413200 CDS
T09616
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130413200 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tdw01009
]
130413200 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130413200 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
tdw03029
]
130413200 (rb1cc1)
Protein phosphatases and associated proteins [BR:
tdw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130413200 (rb1cc1)
Membrane trafficking [BR:
tdw04131
]
Autophagy
Autophagosome formation proteins
ULK complex
130413200 (rb1cc1)
Mitochondrial biogenesis [BR:
tdw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
130413200 (rb1cc1)
BRITE hierarchy
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
TcdB_N
Motif
Other DBs
NCBI-GeneID:
130413200
NCBI-ProteinID:
XP_056594212
EnsemblRapid:
ENSTDLG00000010871
LinkDB
All DBs
Position
23:475474..491457
Genome browser
AA seq
1604 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAIQHQVLVVNGGECMVAERRVC
SYSAGTETNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LALEMQEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLLKFDTAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLDCLTQPSYREGLEKSSTPNPRTSDVEDGDTPIRSA
IFCPGDDHKNGKLLSASGETSSQASSSPQDRLMSSLKAAQQEEEESPERGATPFVNVTLL
DWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRETITKLDNQNMKAIKGLEDRL
YALDQMIASCNKLVNEQKELAQGFHANQKRAENLKDTSVLPDLCLSHANQLMIMLTNHRK
LLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVEAL
STVPQMYCLAVVEVVRRKMFIGHYRQWANALVKDGKNLYEAEKAKRETFGKLFRKSFLRN
RLFRGLDSWPSSSFCTRKPRKFDFELPDISLNDLQYLKSCCPSEVQSYLSVPTLCDFKPL
NHHVEVLHQLVQAAQSVDEMSRTITDLLNEQKVSRSQNAQRSDVLTARSESTAQSTSTSS
KTLTTLSLKAPDCQPSSLPAPLEDLSPDSIDAQTFDFETIGHPNMDPLLHQGSLDLDSLA
ESPESDFMSAVNEFVIEENLMSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTTLEK
ENSKIAALKRSADRYRSASEESQNNLRKVKEDLYHFRGLVLKEQRDFGFSLKTTTNEVWN
FLNSIRYRQEEELRETQQTNLQSLKDDHEKQLLTLTEELEGNRRIVRDVQRAMLELEGLV
ERKEKEISQLESERERSAQELQNLRDLEEKTVKQSEELKAALLYKDELVGQLEKLHIEIE
RGQQRIKQEMENAEKMRLQELEDQLNQRHEAELESVRRDKQSALDVLAQDNLVKRKELMD
SHSAKLKEREGRLKDLEARVEELGDARCKLEVELALKDAEIEDARLQYEEARSSNEEVLK
SEMTAQTAALQTQMDTLNQQLQQKNEEYEVGLAELRALMRLEKDHCISELVDRHEEESIL
LRQELSALKQKSQDAEKDCEERVQKIQQCVESQLHALRKVEEDELKVFQLKEQELRGVVG
DLQAENTLLSVRLEQERTEAQQRAELQKEEAVQAALQEAFRDFQLQKEEIEKRLLGKMEQ
LEHQLKDRQSTETVASCVEVGVDASSDFPQDSGQWSEEKTSLLAKLELLERTKNEEMQNV
KTSLIAEQQTNFNTVLTRERLKKEQIVHEVTEKLNNVMQQQEKDKGLIETLSEDRATILQ
EKKQLEEELNRLRNTVLVSSSYFPPNPGPIITEAQGACGPAHVDVLSPSVPDSEKLASIA
ALKDEERVESAVEASMMSEQDNPMLSEEKQRILILERTLHMKEEENKRLSQRLMSQSMSS
VSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPILYFLHSESLTALDLKPATGAT
RRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaagtcaacaatggaagcacattaacatttgacactgaactt
gccgtccaaactgttttggaccttaaacatgccattcaggccaaatataagattgcgatc
cagcaccaggtgctggtggtcaatggaggtgaatgtatggtggcagagaggcgtgtgtgc
agctacagcgctgggacggagaccaacccaattttcttgttcaataaagagatgatcctg
tgcgacagagctccaaccatccccaaaacaaccttctccatagagaatgagatggagctg
aaggtggaggagtcgctcatgatgcccgctgtctttcacacagtcgcctcgcgtacacag
ctggctttggaaatgcaagaggtcgccaagaagctttgctccttttgtgagcgactggtc
catgacgagcaccttcagcatcagggatgggcggccatcatggctaacctggatgactgc
accctgtcctaccagaaactgcttctcaagtttgacactgcgtatacaaattaccaacag
gactttgaggacatcaaattaaaactcaccaaactcggcactgctgtctctgtcatggcc
aagattcctctacttgattgtttgactcagcccagctacagagaaggcttggagaaatcc
agcaccccaaatccgagaacctccgacgtagaagatggagacacgcccatacggtctgca
atattttgccctggtgacgatcataagaatggaaaactactgtccgcatcaggagagaca
tcgtcccaggcatcatcatctcctcaagacagattaatgagcagcctgaaagcagcacaa
caggaagaggaggagtctcctgaaaggggagccacgccctttgtcaatgtcacgctgttg
gattggatcaacgtgcaggacagacccaatgatgtggagtcggtcgttagaaaatgtttt
gactcgatcaacaggcttgatccaagaattatccagccgtttctatctgaatgccgtgag
accattaccaaactggataatcagaacatgaaggccatcaaaggtctggaggacagattg
tatgcacttgaccaaatgatagcaagttgtaataaattggtgaacgagcagaaggaactt
gctcagggatttcatgccaatcagaagagggcagaaaacctgaaggacacctcagttctg
cccgatctgtgtctgagccacgccaaccagctgatgatcatgttgaccaatcacaggaag
ctgttagacatcaagcagaagtgtaccactgccaaacaggagctcgccaacaaccttcaa
gttcgtctcaaatggtgctgctacgtgatgcttcacgccgatcaggacggagagaagctt
caggctcttctgaggcttctgacggagctgctggagcgagtgagggtggtggaggccctc
agtactgttcctcagatgtactgtctcgctgtggtggaggtggtcaggcgcaaaatgttc
ataggacactacagacagtgggctaatgctcttgtcaaagatggaaaaaacctctatgag
gcagaaaaggcaaaacgggaaaccttcggaaagcttttcaggaagtcctttcttagaaac
cggttgtttcgtgggttagattcatggccatcttcttcattttgtacccgaaagcctcga
aagtttgactttgagcttccagacatttccctgaatgacctgcagtatctcaagtcgtgt
tgtccttctgaagttcagtcgtacctcagtgttccgacactgtgtgactttaagccgctg
aaccaccacgttgaggttctccatcagctggttcaggccgctcagagtgtggatgagatg
tcacgaacgatcacagatctactcaatgaacaaaaggtttcccggagtcagaacgctcaa
agatccgatgtgttaacagccagatctgaaagcacagctcaaagcacctctacctcctcc
aaaacattgaccactctgagtctaaaagcaccagactgccagccctcgtctcttcccgct
ccattagaggatctatcaccggacagcatagatgctcagacctttgactttgaaaccatc
gggcaccccaacatggatcctctattacatcaaggctctttggacttggactcattggca
gaaagtccagagtcagatttcatgtcggcggtcaatgaatttgttatagaggagaattta
atgtcacctaatcctatcagtgatcccacaagccccgagatgatggtggaatcgctttat
tcttccgtcataaatgcaatagacagcaagcgtatccaagacaccacaacgctcgagaag
gaaaactcaaagattgcagcactcaagcggtctgcggacaggtaccggtccgcttcagaa
gagtcccagaacaatctgaggaaagtcaaagaagatctgtaccactttcgaggtcttgtt
ttgaaggaacagcgagacttcggattttcgctgaaaacaacgaccaacgaggtctggaac
tttctgaacagtatcagataccgtcaagaggaggagttaagagaaacgcaacaaaccaat
ctccaaagtctgaaggatgatcacgagaaacagctgctaactctcacggaagagttggag
ggcaatcgaagaatcgtcagagacgtccagagagcaatgctggaactcgagggacttgtg
gagcgcaaggagaaggaaatatcccagctggagagcgagagggaacgttccgcgcaagag
ctgcagaacctgcgagaccttgaggagaagaccgtaaagcaaagcgaagagctgaaggct
gctttgttgtacaaagatgaacttgttgggcaactggagaagcttcatatcgagattgag
cgcggccaacagagaatcaaacaagagatggaaaacgcagagaagatgcgccttcaagaa
ctggaggatcagttgaaccaacgacacgaagcagagctggaatctgtccgacgggacaaa
caaagtgcccttgacgtccttgcccaggacaaccttgtaaagcgaaaagagctgatggat
tctcactcggccaaactcaaggaacgtgagggacgcttgaaagatctagaggcccgtgtg
gaagaacttggagatgcccgctgcaaactagaagtggagttagcgcttaaggacgctgag
atcgaggatgcgagactgcagtacgaggaggccagaagttccaacgaggaggtgttgaaa
tcagagatgaccgctcaaacggccgccctgcagacgcagatggacacgctgaaccagcag
ctccagcagaagaatgaggagtacgaggtgggcctggccgagctacgagcgctcatgagg
ttggagaaagaccactgcatctctgaactggtggatcgacacgaggaggagagcatattg
ctccgccaagagttatccgcgctcaaacagaagtcgcaggatgcggagaaggactgcgag
gaacgggttcaaaaaatccagcagtgcgttgagagccagcttcatgccttgcggaaggta
gaggaggatgagctgaaggttttccaattgaaagaacaagaactgagaggtgttgtcggg
gacctgcaggctgagaacacgctgctttctgtaagactggagcaggagaggacggaggcc
cagcagagggcggagctgcagaaggaggaggcggtccaggctgcgttacaagaggccttt
agagactttcaactccaaaaagaggagattgagaaaagactgttaggaaaaatggaacaa
cttgaacatcagctcaaagacagacaatccactgagacagtggcatcttgtgtagaggtt
ggtgtggacgccagcagtgatttccctcaggacagcggccagtggtcagaggagaagacg
tctctcttggccaaactagagctcttggaacgcacaaagaatgaagagatgcagaacgtg
aagacctcgcttattgccgagcagcagacgaacttcaacactgttctgacacgagagagg
ctgaaaaaagagcaaatcgtccatgaagtgaccgagaagctcaacaacgtcatgcagcaa
caagaaaaggataaaggtctgattgagacactttccgaggaccgcgccaccatcctgcaa
gagaagaaacagttggaggaggagcttaaccgcttaagaaacactgtcctcgtgtcttcg
tcctactttccgcccaatcccggccccatcatcacggaggcccaaggtgcctgtggcccc
gcccatgtggacgtactctctccctccgtccctgactcggagaagctggcgtccatcgct
gcgcttaaggatgaggagcgggtggagtcagccgtggaggccagcatgatgtcagagcag
gacaaccctatgctgtctgaagaaaaacaacgcattctgattttggaaaggaccttacat
atgaaggaggaggagaacaaaagactcagtcaaagactgatgtcacagagtatgtcgtcc
gtatcatcgaggcactctgagaaaatcgccatccgagattttcaggtgggcgacttggtt
ctcatcattctggatgagaggcacgataattatgtcctcttcactgttggacccatcctt
tatttcctacattcagagtcgctcacagccctggacctcaagccagcaacaggagccaca
cggcggccgtgggttttaggaaaagtcatggagaaggaatattgccaagccaaaaaggcc
caaaaccggttcaaagttcctcttggcaccaaattctacagagtaaaagcggtaccgtgg
aacaagaaagtgtaa
DBGET
integrated database retrieval system
