Triplophysa dalaica: 130413490
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Entry
130413490 CDS
T09616
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130413490 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130413490 (col11a1a)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130413490 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
130413490
NCBI-ProteinID:
XP_056594728
LinkDB
All DBs
Position
23:complement(4074858..4137072)
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AA seq
1818 aa
AA seq
DB search
MERPRWSPMWKTKRWLLDSTISKFITVSSLVLILQAPTVRAAEPVDVLKVLEFHNVPEGV
QKTSGFCTNRRSSQPDTAYKVGKNAQISAPTKQLFPDGVFPEDFSILTTIRPKAGIQSFL
LSIYNEKGIQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRSLNLADGKWHRVGISVEKKT
VTITVDCKKKLTKPLGRSDRAGLDTNGITVFGTRILDEEAFEGDIQQLLIVADPKAAYEY
CEHYIPDCDVPHKDTIQAQEPEEYPTAVEYGDLYDYYDAATPTATDEYSEPQPNNVDGEF
YTDSEIDYGTVDDTRTPGATSGPSQAEEEEVFSDFVTDVPEASLDPTAAPEPVMPSGTAE
PVAVDTYDFKEYDLKEYDLTGLNKNQYEYGAYDEFGRVAPNPTANYEDFFGPGVAAETDI
DETEVRSEVGGGAVLGQKGEKGEPAVIEPGMLIEGPSGPPGPSGLPGPPGLQGPPGPAGD
SGDRGPNGRAGLPGADGIPGPPGTMLMLPFRFGGDSEKGPVVSAQEAQAQAILSQARLAM
RGPSGPMGLTGRSGPVGLPGAPGLKGDSGDPGHQGPRGMQGPPGPIGKSGKRGRAGADGG
RGMPGESGSKGDRGFDGLPGLPGDKGHRGESGPAGPPGPPGEDGPRGEDGEIGPRGLAGE
SGPRGLLGPRGPPGPSGQPGIAGVDGPHGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGP
IGSPGEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGTLGQPGPQGPIGYPGPRGVKGA
DGVRGLKGGKGEKGEDGFPGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRSGPNGESGP
LGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGTRGLAGKAGPRGQRGPTGP
RGARGARGPTGKLGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPNGERGHPGPPGPPGEQGLPGAGGKEGA
KGDPGPQGTSGKDGPPGLRGFPGERGLPGATGSAGLKGAEGPQGPPGPVGSPGERGAAGP
AGPIGLSGRSGPQGPPGPAGEKGAPGERGPLGPAGRDGVQGPVGLPGPAGPQGSPGEDGD
KGEVGEPGQKGSKADKGEQGPPGPSGLQGPLGAPGPAGSDGEPGPRGQQGMFGQKGDEGA
RGFPGPPGPIGLQGLPGPSGEKGENGDVGPMGPPGPPGPRGPQGPSGADGAQGPPGGIGA
MGSVGEKGEQGEAGNPGPSGEPGPGGPKGERGEKGEAGPSGAAGPSGPKGPPGDDGPKGN
SGPVGFPGDPGPPGEPGVGGIDGGPGEKGEDGENGQPGPPGPSGEAGPPGPPGKRGSPGA
AGSEGRQGEKGAKGEAGSEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGASGQ
DGPPGPMGPPGLPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGQGGSKGD
SGIGGASGPLGPPGPPGLPGPQGPKGSKGSTGTSGQKGDTGTAGPPGPPGPPGEIIQPLP
YHMPKKSRRSIDMQADDAGTILDYGEGMEDIFSSLNNLKQDIERMKYPMGTQGNPARSCK
DLQLAHPEFPDGEYHIDPNQGCSGDSFKVYCNFTAGGETCIFPDKKSNGVRISSWPKEVP
GSWFSEFKRGKILSYVDADGNSIDMVQMTFLKLLTASARQNLTYSCHQSVAWYDDTTDSY
DKGLRFLGSNDEEMSYDNNPFIKAVSDSCSMRKGYGKTVLEINTPKIDQVPIVDVMFTDF
GDPNQKFGFEVGPVCFLG
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atggagaggccaaggtggtccccaatgtggaaaacgaaaaggtggcttttggattccact
atttccaaattcatcacagtttcatccctcgtcctgattctgcaggctccaactgtcaga
gcagcagaacccgtggatgtcctcaaagtattagaatttcacaatgtcccagaaggagta
cagaaaacttcaggcttttgtacgaaccgaagatcatcgcagccggacacagcctacaaa
gtaggcaagaacgcccagatcagcgctccaaccaagcagcttttcccagatggtgtgttc
cctgaagacttttccatcctaaccaccatcaggcccaaagctgggatccagtccttcctt
ttgtccatctataatgagaaaggcatccagcaactaggtgtcgaagtgggccgctctcct
gtcttcctgtacgaggatcagacgggcaagcccgcccctgaggattaccccctgttccgc
tccctcaacctggccgacgggaagtggcatcgtgtaggcatcagcgttgagaagaagacc
gtgactataactgttgactgtaaaaagaagttgaccaaacccttgggcaggagtgaccgt
gccggtcttgacaccaatggcataaccgtctttggcaccaggatcctggatgaagaagct
tttgagggtgacattcaacaactgctgattgtggccgatcccaaagcagcctacgaatac
tgtgaacactacatcccagactgtgacgtacctcacaaagacacaatacaagcacaggaa
ccagaggagtacccaactgctgttgaatatggtgatttatatgattattatgatgcagcg
acccccacagccacagatgaatattctgagccgcagcctaacaatgtagatggggagttc
tatacagacagtgaaattgactacggaacggtagatgataccagaactcctggggcaact
tctggacctagccaggcagaggaagaggaggttttcagtgacttcgtcactgatgtgccc
gaggcttctctggacccgaccgctgctccagagcctgtgatgcccagtggcaccgccgag
cccgttgcagtggatacctacgactttaaggagtatgatcttaaagaatatgatttgact
gggcttaacaaaaatcagtatgagtacggagcatatgatgagttcggccgcgtcgctccg
aaccccacggccaactatgaggactttttcgggccgggggtggctgcagaaaccgacata
gacgaaaccgaagtgaggtcggaagtgggaggaggtgctgttctgggacagaaaggagaa
aagggagagcctgccgttattgagccgggaatgctaattgaggggccttccggaccacct
ggcccttccggtctaccaggtcctccaggtttgcaaggcccccctggtcctgctggagat
tcaggtgacaggggtcctaacggccgagctggtcttcccggagcagatggtatcccaggc
ccccctggtactatgctgatgttgccattccgtttcggcggtgatagtgagaaaggtcca
gtggtgtccgctcaagaggcccaggctcaggccattctctcacaagcccggctcgccatg
agaggtccctcaggtccaatgggtcttactggaagatcaggaccagtgggtcttccaggt
gctcctggactgaagggagacagcggagaccctggtcatcagggtccgaggggtatgcag
ggcccaccagggccgattggaaaatctggcaagagggggcgtgccggagccgatgggggc
cgtggtatgcctggagagtcaggatccaagggtgacagaggttttgacgggcttcctggt
ctacctggtgataagggtcatcggggtgagtctggccctgctggacccccaggacctcct
ggagaagacggtccaaggggagaagatggagagatcggaccaagaggtctggctggtgag
agtggcccccgtggtcttcttggtcctagaggtcctcctgggccatccgggcagcctgga
atcgctggtgttgatggtccacatggccccaaaggaaacatgggaccgcagggagaacct
ggtcccccgggacaacagggaatcccaggaacacaaggtcttccaggtccacagggtccc
atcggatcgcccggagagaaaggtcctcaggggagatcgggcttgcctggattgcctggc
gctgatggaccgcctggacatcctggaaaggagggtccgcccggagagaaaggcactttg
ggtcaacctggtccccaagggcccatcggctatcctggccctcgcggtgtgaagggtgca
gatggcgttcgtggtctaaagggaggcaaaggagagaagggtgaggacggtttcccaggt
ttcaagggagacatgggtcttaaaggtgacaggggtgagctcggattggccggccccaga
ggtgaggacggaccggagggcccgaaaggtcgctcaggccccaacggtgaatctggcccc
ttgggccccgctggagaaaagggcaagctcggcgtacctggattgcctggatatccggga
cgtcaagggccaaagggttcgaccggtttccccggattcccaggagccaacggagagaaa
ggaaccaggggtctggcaggaaaagccggtccaagagggcaaagaggtccaacgggtcct
cgaggggcacgtggtgccagaggcccaacaggaaaactgggccctaagggcacagcaggc
aatgatggtccacctggtccacctggtgagagaggacctcaagggccccagggtcctgtt
ggtttcccagggccaaaaggtccccctggaccacctggaaaggacgggctgcccggtcac
cctggccagcgcggtgagacgggattccaaggcaaaactggcccacctggacctggaggt
gttgtcgggcctcagggtccaacaggagagactggtcccaatggtgaaagaggacatcct
ggaccccctggtcctcctggagagcaaggtcttccaggcgctggtggaaaagaaggtgca
aagggagatccaggtcctcagggcacttctggaaaagacgggcctccgggtctgagagga
ttcccgggagagcgaggtcttcctggagcgacgggttcagctggtttaaaaggagcagag
ggacctcagggtccacccggccctgttggctctcccggtgagagaggagcggcaggacct
gctggccccatcggtttgtctggacgcagtggacctcaaggacctccaggacctgctgga
gagaagggtgccccgggagagagaggccctcttggtccagccggtcgtgatggagtccaa
ggtccggttggtctgcctggtccagcaggacctcagggttcacctggagaagatggtgac
aagggagaagttggtgaaccgggccagaagggaagtaaagctgacaaaggtgaacagggt
cctccaggtccgtctggtcttcagggtcctctcggagctcccggacctgctggatctgat
ggagaaccaggtccccgtggacagcagggtatgtttggacagaagggagatgaaggagcc
aggggcttcccaggacctcctggtcccattggtctgcagggtcttcctggaccgtcaggt
gagaaaggagaaaatggagacgttggtcctatgggaccccccgggccacctggtcctaga
ggtcctcagggtccttccggtgctgatggtgcacaaggtcctccaggtggaataggagct
atgggatccgtcggcgagaagggtgagcaaggtgaagctggcaaccctggaccttctgga
gagcctggacccgggggcccgaaaggtgagagaggagaaaagggcgaagctggtccatct
ggtgccgccggaccctctggtcccaaaggaccccctggagatgatggccccaagggtaac
tccggccctgttggttttcctggagaccccggtccacctggtgagccaggtgttggtgga
atagatggaggacctggagaaaaaggagaagatggagagaatggtcaacctggaccccct
ggtccatctggagaagctggtccaccaggacctcccggcaagcgaggatccccgggggct
gccggatccgaaggcaggcaaggagagaagggcgccaagggtgaggcaggatctgagggt
ccgccaggcaaaacgggtccagttggccctcagggtcccgccggaaagcctggtcctgaa
ggtctcaggggaatccctggccctgtgggtgaacaaggacttcctggtgcttccggacaa
gatggcccacctggaccgatgggacctcctggtctccctggcctgaaaggagaccctggc
actaagggtgaaaagggtcaccccggtctaattggtctcatcggaccccccggtgagcag
ggagagaagggagatcgaggtttgcccggtcctcagggccagggtggcagcaagggtgat
tctggtattggtggagcttctggtccccttggtccacctggtcctcctggattgcctggt
ccacaagggccaaagggatccaagggttcaactggtacctctggtcagaagggagacacc
ggcactgctggacctcctggtcctcctggtccacccggtgagatcatccagcctctgccc
taccatatgcccaagaagtcccgtcgttccatcgacatgcaggccgatgatgcgggcacc
atccttgactacggagagggcatggaggacatcttcagctccttgaataacctcaaacag
gacatcgaacgcatgaagtaccccatgggcacgcagggcaaccccgcgagaagttgcaaa
gacctccagctcgctcatccggagttcccagatggtgaataccacattgatcccaaccag
ggatgctcaggagactccttcaaagtgtactgcaacttcacagcgggaggcgaaacctgc
atcttccccgataaaaagtcaaacggagtgaggatatcttcatggcccaaagaggttcct
ggctcttggttcagtgaatttaagcgtggcaaaatactttcgtatgtggacgcagacggc
aactcaatagacatggtccaaatgacgttcctcaaactactgaccgcctctgccaggcaa
aacctgacctacagctgccatcaatccgtagcctggtacgacgacaccacggacagctac
gacaaggggctccgcttcctcggctccaatgatgaggagatgtcatacgacaacaatccc
tttatcaaggccgtgtcagacagctgttcgatgaggaaaggctacggaaagactgttctg
gagattaacactcccaaaatcgatcaggttccgattgtcgacgtgatgttcactgacttt
ggtgatcccaaccagaagtttggattcgaagttggtccggtgtgcttccttggctaa
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