Triplophysa dalaica: 130413507
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Entry
130413507 CDS
T09616
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130413507 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130413507 (smarca5)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130413507 (smarca5)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
130413507 (smarca5)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
130413507 (smarca5)
RSF complex
130413507 (smarca5)
WICH complex
130413507 (smarca5)
B-WICH complex
130413507 (smarca5)
NORC complex
130413507 (smarca5)
BRF complex
130413507 (smarca5)
NuRF complex (fruit fly)
130413507 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
Myb_DNA-binding
HDA2-3
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
130413507
NCBI-ProteinID:
XP_056594757
LinkDB
All DBs
Position
2:7719791..7731316
Genome browser
AA seq
1035 aa
AA seq
DB search
MSETEGSMEQQLEEPSQHDPAGPAEDETSENGRDEVSDTALDSEVQSSSSPSEKEQVELS
SGYEEKVQTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLS
AGDNRHRRTEQEEDEELLSENSKATSVCTRFDNSPSYVKSGKLRDYQVRGLNWLISLYEN
GINGILADEMGLGKTLQTISLLGYMKHYRNILGPHMVLVPKSTLYNWMNEFKRWVPSLRA
VCLIGDKNERNAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEK
SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTNNCLGD
QKLVERLHLVLRPFLLRRIKADVEKSLLPKKEIKMYIGLSKMQREWYTKILMKDIDILNS
AGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNGGKMVVLDKLLPKLKE
QGSRVLIFSQMTRVLDILEDYCMWRNHNYCRLDGQTPHEERQISINAFNEPDSPKFLFML
STRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERI
VERAEMKLRLDSIVIQQGRLVDPSMNKLGKDEMLSIIRHGATHVFASKESEITDEDIDAI
LERGEKKTMEMKERLSNLGEGSLKNFTVDTENSVYNFEGEDYREKKKVITNWIEPPKRER
KANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGY
KVPRNPDLPNSAQAQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWTKRDFNQFIKANE
KWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIK
KALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIR
NSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEERERAEKKKRGPRTSSAQKRKQ
DGTPDGRGRRKKLKL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaacagaaggcagcatggagcagcagctagaagagccgagccaacacgacccg
gccggtccagcagaggatgagacgtcagaaaatggtcgtgatgaagtttcggatacagcg
ctggatagcgaagtccagtcatcctcatctccctcagagaaagaacaagttgaactgtcg
agtggatacgaagaaaaagtgcaaacagaccggacaaatagattcgagtacctcctgaag
cagactgaagtatttgctcatttcatccaaccagccgcccagaagacgccaacttcacct
ctaaagatgaagcctggtcgccctcgcattaaaaaagatgagaaacagaatctgctgtct
gccggagataaccggcatcgtcgcactgagcaggaggaagatgaggagcttctaagtgaa
aacagcaaggccaccagcgtttgcacacgttttgataactccccttcatatgtaaaatcc
ggcaagctgagagactatcaggtccgtggactcaactggctaatttcactctatgagaat
ggaattaatggaatcctggctgatgaaatgggtcttggaaagactctccagaccatctct
ctgttgggctacatgaagcattatagaaatattcttggacctcacatggttctcgtgccc
aagtccacgttgtataactggatgaatgagtttaagcgctgggttccctctctgagggcc
gtctgcctcatcggtgataaaaatgaaagaaacgcatttatccgtgacacgctgctgcca
ggcgaatgggatgtgtgcgttacctcctatgagatgcttattatcgagagggccgtcttc
aaaaagttcaactggagatacctggttattgacgaggcccaccgtatcaagaatgaaaaa
tcaaagctttcagagattgtgcgagagttcaagacgacaaatcgattgctgctgactgga
acgcctctgcagaacaaccttcatgagctttgggctctgctgaacttcctgttgcccgat
gtcttcaactcttctgaggattttgacgcctggtttgacacaaataactgtcttggagac
caaaagttggtggagcgtctacatttggtattgcgtccattcctgttgagacgtattaaa
gctgacgtggagaaatctctactccccaaaaaggagatcaagatgtatattgggctcagc
aagatgcagagagaatggtacaccaagattttgatgaaggatattgacattttaaactcc
gctggtaagatggacaaaatgcgcctgctgaacgttctgatgcagctgaggaagtgctgt
aatcatccctacctgtttgatggggcggagcctggcccaccctacaccactgacctccac
ctggttgtcaacggaggcaagatggtggtgctggacaaactgctacctaaactcaaagag
caaggctctcgtgttctgatcttcagccaaatgacaagggtgctggacattctggaggat
tattgtatgtggcgaaaccataattactgccgcctggatggacagacgccccatgaggag
cgacagatctccatcaatgctttcaatgagcctgacagcccaaagtttctattcatgtta
agcaccagagctggaggtctcgggatcaatctggccactgctgatgttgtcatcatctac
gactcggactggaatcctcaagtggatcttcaagctatggatcgcgcccacaggattggt
caaaagaaacaggtgcgcgtgttccgcttcatcacagaaaacacagtcgaggaaagaatt
gtggagcgtgcggaaatgaaactccgtttggactccatcgtcattcagcaaggcagacta
gtagatccaagtatgaacaaactgggcaaggatgaaatgctgtccatcattcgacacggt
gccacccacgttttcgcttctaaggagagcgagatcacagatgaagatattgatgccatc
ttggagagaggagagaagaagaccatggagatgaaggaaaggctatccaatcttggcgaa
ggctcactgaaaaacttcactgtggacacagagaacagcgtgtacaattttgagggtgaa
gattacagagaaaagaagaaggtcatcactaactggattgaaccgcccaagagagaacgc
aaggctaattacgctgtggacgcctatttcagagaggccctacgtgtcagcgagcccaaa
gcaccaaaggctcctcgtccacccaaacagcctaacgttcaagactttcagttctttcct
cctcggctctttgagctgctagagaaggagattttgtattacaggaaaactattggctat
aaggtgccaagaaacccagatctgcccaactcggcccaagcgcagaaggaggaacaggca
aagattgatgaagcagaaccacttaatgaggaggagctagaggagaaggagaacctcctc
tcacagggtttcactatctggaccaagcgagacttcaatcagttcatcaaggccaacgag
aagtggggaagagatgacatagagaacattgctcgtgaggtcgagggaaaaacgccagag
gaggtcatggaatattctgctgtgttttgggagcgctgcaatgagcttcaggacattgag
aagatcatggctcagattgaaagaggagaagccagaatccaaagaaggatcagcatcaag
aaagcactggactctaaaatcggtcgttataaggcaccttttcatcaactcagaatctcc
tatggcaccaacaaagggaagaactacacagaggaagaggatcgctttctcatctgcatg
ctgcacaagctgggttttgacaaggagagcgtttacgacgagctgcgtcagtgcatacgc
aactctccccagtttcgcttcgactggtttctcaaatcccgcacggccatggagcttcag
aggaggtgtaacaccctgatcacacttattgaacgtgagaacatggagctggaggagcga
gagagggcagagaagaaaaagagaggacctcgcacatcttcggcccagaaacgcaagcag
gatgggactcctgacggtcgtggtcgccggaaaaagctcaaattgtga
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