Triplophysa dalaica: 130413663
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Entry
130413663 CDS
T09616
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130413663 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdw03032
]
130413663 (topbp1)
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130413663 (topbp1)
DNA replication proteins [BR:
tdw03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
130413663 (topbp1)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
130413663 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
130413663
NCBI-ProteinID:
XP_056595016
LinkDB
All DBs
Position
23:9115227..9125888
Genome browser
AA seq
1343 aa
AA seq
DB search
MLEKSQDSVFHHSELNIEDYQCPVLKGCTVCVTGLSTVERKEVQRLCEQHGGRYTGQLKM
NECTHLIVSEPTGQKYEFARKWNVYCISLHWLFDSIEKGFCQDESRYTVERGQKPGRPNT
STPTGPTRNKEEGPSLLGLSHISNISMNVNETALTTVGMSHIEAPNPIDSFDITVCRVED
LLDGCKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQDLTHIVMGEPDQGVKVFLEKATH
RPHIVTVHWLLESFSHGTLLPEDAYFHPSFLPPAPAAVDMPAPRGSASRTSRPSAAPHPA
PSPARQARAEEDLLSQYMENDHTVVELPQAANTTSNRQSVLLPDPPAAGQDSTMCEGSEG
GFFRGKRFLLVGFAAETEAQLSELIMENSGKILVGRSRAVAHYAIVPLLGCDVEATVDEV
ATDTWLAMCVEQQSVLPLASHPLFTPLTIREGFTPLKDCVLSVSQFTGAERDSLIQLAKH
LGASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWSLPAVTIRWVLESATTGKR
ADEGRYLVDMPPSPERTEDSFVGASQRDPAPLRVQQHSPEFPLLGPQSSTAITPLDTARF
QSRSVRSAVRKMKLGEEQQSEVATPGQEDSRGAPQKDSSLHLDTPSRFLSRDRLFGPSFN
TKDVFDHLKTPGNKPQDGQKAETPLSEVIERNLNAAVANSNRSHVTNLASMTASPQLGIE
PMSELEQSTVAPLTGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHYIYQGKVG
DNTKEYRAVKERGIHIVSQHWLQACADEQKRVSESLYPFTFNPKMSLTMSQMADCTQRSP
PPSTPRTRLRTFTEDEETRFGPLDDITDITTPKRISVGEPEKELQPISTDRRDLTETLEM
RENLQRQLQEIMSATKLTNGRRGSTRLTRAGSGGLDSPNTPDSLGRMGRRSRNLEALRMS
RQVVVDLNTEPSQSEQIVWDDPTAREERARLADNLQWPGSPSQHSEPLALIPQPPVKTSD
ARDSMTDSELVEMAAFEVIDAQLLPKVTPPRGNTTQNPKTPEAPSIAFPISKPALPPQIE
LEEDSEEAVKEEPPRFLLSSLNPQERIDYSHLIEELGGVVLEKQSFDPSCTHVIVGYPLR
NEKYLAAMAAGKWILHRSYLEACRSEGRFILEEQYEWGSSSILDALSSINSQQKRLALAA
MRWRKTLQGCTHKEGAFGGWTVMLNIDQAREAGFRRLLQSGGAKVLPDPSPSLYKETTHL
FVDFSRLKSGDVRVNVSEAAVYGVKCLKPEYIADYLMQEPSPPIEAYYLPAVASEDSEKV
HNTSSRKRKGSEEISMLKKSRVR
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaaaatctcaagatagtgtgttccatcactctgagctgaatatagaagattat
cagtgtccggtcctgaagggctgtacggtgtgtgtgacgggtctctctactgttgagcgt
aaagaggttcagaggttgtgtgaacaacacggaggccgttacacggggcagctcaagatg
aacgagtgcactcacctcattgtcagcgaacccacaggtcagaagtatgaatttgcccgt
aagtggaatgtatactgcatatccctgcactggctgtttgacagcatagagaaaggcttc
tgtcaggatgagagcagatatactgtggagcgcgggcaaaaaccgggccgacccaacact
tccactcctacagggcccaccaggaacaaagaggagggtccctcgcttttgggactgagc
catatctccaatatcagcatgaatgtcaatgaaacggccctcactacggtgggaatgagc
cacatagaggctcctaatccaatcgattcattcgacataactgtctgtcgagttgaagac
ctgttggatggctgcaagctgtatttgtgtgggctgtccggaaagaagctggagaaacta
cggcggatggtgaactctgccggaggcctgcgcttcaaccagcctagccaggacctcaca
cacatagtgatgggggaaccagatcagggggtcaaggtcttcttagagaaagccactcac
aggccccatattgtcacggtgcattggctgctggagagtttttcccatggtactttgctt
ccagaagatgcctactttcatccctctttcctgccgcctgccccagcggctgttgatatg
ccagccccccgtggatctgcctcacgcacctccagaccctctgcagctcctcatcccgcc
cccagtccggccagacaggcccgagctgaggaagacttactctcacagtacatggaaaat
gaccacactgtggtggagttacctcaggccgctaataccaccagcaacaggcagagcgtt
ctgcttccagaccctccagctgcaggacaggactccactatgtgtgaaggctctgagggc
ggcttcttcagaggcaaacggttcctcctggtcggttttgcagctgagacagaagcccag
ctctcagagctcatcatggaaaactctgggaagattttggtcggccgctccagagcagtg
gcgcactatgccatcgtgccactgctgggctgcgacgttgaggccacggtggatgaggtt
gcgacagatacctggctggccatgtgtgtagagcagcagagtgtgttgccgctcgcgtcc
caccctttgtttactccgttgactataagagaggggttcactcctctcaaagactgcgtg
ctgtctgtcagtcaattcactggagctgagagagattctctcatacagctagccaaacac
ttgggagccagtgttcaggattattttgtacgaactgctaaccagaggaagggaatgctg
gccagcactcatttggtactacagacacccgaggggacaaagtaccaggccgcccagaaa
tggagtctgcctgcggttacgattcgctgggttttagagtccgcaacaacaggaaagcgt
gctgatgagggacgatacctggttgacatgccaccttctcctgagagaacagaggacagt
ttcgttggagcgtctcaaagagacccagcacctctgcgtgtccagcagcactccccagag
ttccctctcctgggcccacagagcagcacagccatcacccctctagatacggcccgattt
cagagccgctccgtccggtcagcagtcagaaaaatgaagctgggggaagagcagcagtca
gaggtggcgacaccaggacaggaggactccagaggagcacctcagaaagactcctccctc
catttagacactccctcacgattcctgagcagagaccggctcttcggaccttcatttaac
acgaaggatgtgtttgatcatttaaagactcctggtaataaacctcaggatggtcagaaa
gcagagactcctctttctgaggtcatcgaacgaaacctaaatgctgccgttgccaatagc
aaccgcagtcatgtgacaaatcttgcatccatgactgccagtcctcaactgggaatagag
cctatgtctgagctggagcagagtactgtagctcctcttactggagtggtggtgtgtgtg
agtaagaaactaagcaagaaacaaagtgaactcaatgcagtggctgcttctctgggcgca
gacttcaggtggtcatgtgacgactcggtcactcattacatctaccagggtaaagtggga
gacaacaccaaagaatacagagctgttaaagagaggggaatacacatagtgtctcaacac
tggctacaggcttgtgcagatgagcaaaagcgtgtgtcggagtcgctttaccctttcacc
tttaaccctaaaatgagcctaaccatgagtcagatggcagactgcacccagaggtcaccg
cctccttccactccccgcaccagacttcgaacatttacagaagatgaagagaccaggttt
ggtccattggatgacatcacagacatcaccactccgaaacgaatcagtgtgggggagcct
gagaaagagctacagcctataagcacagacagacgagatctcacagaaacattagagatg
agggagaatcttcagaggcagcttcaggaaatcatgtctgcgactaagctgaccaacggt
cggcgcggctccacaagattgacaagagctggctcaggggggctggactcacccaacacc
cccgacagtctcggacgaatgggccgacgcagtcgcaatctggaggctttacgaatgtcc
cgtcaggtggttgtagacctgaacaccgaaccgtctcagagtgaacagatcgtttgggac
gacccgacggcacgagaggagcgagcccgattagctgacaacctgcagtggcccggcagc
ccctctcagcactccgagccccttgctctcatcccacaaccccctgtcaaaaccagtgac
gcccgagactccatgactgactctgaactggtagaaatggctgcatttgaagtcatagac
gcgcaactgctacctaaggtgaccccaccccgaggcaacacgacccaaaaccctaaaaca
cccgaagccccaagtattgctttccctatttctaaacctgcactccctccacagattgag
ctggaagaggatagtgaagaggcggtcaaagaagagccaccacgttttcttctttcttca
ctgaatccacaggaacgtatcgactacagccatcttattgaagagctcggtggtgttgtg
ctggaaaagcagagtttcgaccccagctgcacccatgtgatcgtgggttatcctctgagg
aatgagaagtatctggcggccatggcagctggtaaatggatcctccaccgctcgtacctg
gaggcctgccgctcagagggtcgcttcatactggaggagcagtatgagtggggaagcagc
tctatactggatgcactctcatccatcaactctcaacagaagagactggccctggcagct
atgcgatggagaaaaacactgcaaggctgcacccacaaggagggagcatttgggggctgg
actgtgatgctgaatatagaccaggccagagaggctggattcagacgtctgctgcagtcg
ggaggggctaaggttttacccgatccttccccttccctgtataaagaaaccactcacctg
tttgtagattttagtcggttaaagtcgggtgatgtcagagtgaatgtgagtgaggctgcg
gtttatggggtcaaatgtcttaaacccgagtacatcgctgattatctcatgcaggagcca
tcaccaccaatagaggcttattaccttcccgctgtagcctcagaagattcagagaaggtt
cacaacacatcttcacgcaaacgtaaagggtctgaagaaatatctatgttaaagaagagt
cgtgtccgatga
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