Triplophysa dalaica: 130414098
Help
Entry
130414098 CDS
T09616
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03030
DNA replication
tdw03410
Base excision repair
tdw03420
Nucleotide excision repair
tdw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130414098 (rfc1)
03410 Base excision repair
130414098 (rfc1)
03420 Nucleotide excision repair
130414098 (rfc1)
03430 Mismatch repair
130414098 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdw03032
]
130414098 (rfc1)
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130414098 (rfc1)
DNA replication proteins [BR:
tdw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130414098 (rfc1)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130414098 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_7
AAA_22
AAA_33
AAA_5
AAA_30
RuvB_N
Rad17
BRCT_2
AAA_16
nSTAND3
AAA_14
AAA_17
AAA_19
AAA_18
NTPase_1
RNA_helicase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
130414098
NCBI-ProteinID:
XP_056595770
LinkDB
All DBs
Position
2:18967884..18978638
Genome browser
AA seq
1155 aa
AA seq
DB search
MDIRRFFAPTKLAAPKPLNGSSGTDEEPKKKQKSKTKVKSPKSDEKPTGKRKKRAIIDSD
SDEDKKESKTKKSSKEVSAPPEKKHPVTYVSDSDSDDTFLSLKKSSKPKQNGTAKSKKES
DSGKTKPVKASSTLSKSPVISPTATVKAGLKSSQPTISPKTGPTPPKQTLTSVIDFFGSS
SVQRSDKKMVASAKRKAATQDSEGSLSDEVIARELQMDEEMDKEKQIHEDEEFARTLAML
DEAPLSKKARVDSVSPSKSSSQLNSSDTKAKIKKPSPKKSPLKTSSKLAQMKRRQEEEHG
ETKKDKGEKQIKISPKKEFISPKKEFISPNRSEGAATPRTGSASEGTTKSKSFSTRKGDE
PSKTSPTKPEKTSPEDFEKKRANTSAYRSYLNRDGPRSLGSKEIPQGAENCLEGCVFVVT
GVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESFGTKIINEDEL
LELIKTKPGKKSKYEIAAEAESKSATVKTPNSRGKRTPPAKKATPQGPSPNKRSPSAGKS
NSGSASNRSVASRSSSDVKKSLSYDQTKSTSSASHSTTESDGNSLLWVDKYRPRSLKNLI
GQQGDQSCANKLIRWLQNWHRHHGGNGKAPPVKFSKFGSKDDGSGFKAALLSGPPGVGKT
TTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASKTVSSKHVLIM
DEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQ
IKGAVMSIAFKEGLKIPPPAVNEIILASNQDIRQVLHNLSMWSAKDKVMTYDGVKADANN
AKKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYIHVRPVAAGG
NLKNHLVLLSKAADSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTF
PSWLGKFSSTGRYSRTIQELASHTSLKTLSSKEAINLDYLPYLRSAILEPLQSQGAEGAN
QSVKLMDDYDIIKEDVDNIMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLHV
VKKSRKGAVDPELVGELGGESQVQGEEEDDDGVIADAMIKQKKAKPAKKDAKPEKAGDSG
KGKGKGKGKGKTRRT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggaggttttttgcgccaaccaaacttgcagcgccaaaacctttaaacgga
agcagcggcaccgatgaagagccgaagaagaaacaaaaatcaaagaccaaggtcaaaagt
cctaaatctgacgagaaacccactggaaaacgaaagaaaagagccataatcgattcagac
tccgatgaagacaagaaagagagtaaaaccaagaaaagctctaaagaggtttctgctcca
ccagaaaagaaacatccagttacttatgtgtctgattctgattcagacgatacatttttg
tctctgaaaaagtcctcgaaacccaaacaaaatggtacggctaagagcaaaaaggaatcg
gattcaggaaaaacaaaaccggtcaaggcatcttctacattgtctaaatctccggtcata
tccccgactgccaccgtgaaggcagggttgaagagttctcagcccaccatctccccaaag
acaggaccgaccccgcccaaacagacactcacatcagttatagacttttttgggagctca
agtgttcaaaggtcggacaagaaaatggtggccagcgcaaagaggaaagcagccacacag
gattctgaaggctcgctcagtgatgaagtcattgcaagagaacttcagatggatgaagaa
atggataaggagaaacagattcatgaggatgaggaatttgcaagaacattagcaatgctt
gatgaagcccccttatcaaaaaaggctcgtgttgattcagtctccccctccaagagcagc
tcgcagctcaattcctcagacaccaaagccaagataaagaagccatctcctaaaaaaagc
cctctcaagacgagctccaaactggctcaaatgaaaagacgacaagaagaagagcatggg
gagacgaaaaaagacaaaggcgaaaagcagattaagatctccccgaagaaagagttcatc
tccccgaagaaagagttcatctcaccgaatcgctcagaaggtgcagccactcccagaact
ggaagtgcttcagagggaacgacaaaatcaaaaagtttttccacgcgtaaaggagatgaa
cccagtaaaacttcaccaacaaaaccagagaaaacaagtcctgaagatttcgagaagaaa
cgggctaacacatcggcctaccgaagttatctgaacagagatggcccacggtcactgggc
tctaaagagataccacagggagcggagaactgtctggagggctgtgtgtttgtggtgaca
ggcgtgttagagtctatggaaagggacgatgctaagtcgctaatagagcgttacggtggg
aaggtcacaggaaacgtcagccgcaaaaccacttaccttgttcttggacgagacagcgga
gcctcaaaaacagagaaggcggagagttttggcactaagatcattaatgaagatgagttg
ctggagctcataaaaaccaaaccagggaaaaagtcgaagtatgaaattgcagcggaggcc
gagagtaaatctgctacagtaaagaccccgaattctagaggcaaacgcactcctccagcc
aagaaggccacgccacaagggcccagccccaacaaaagaagcccttcagctggaaaatct
aattctggatctgcctcaaacagatctgttgcctctcgctcaagttcagacgtcaaaaaa
agtttgagttatgatcagaccaagtcaacatcatctgcatctcactccaccacagaaagt
gatggaaacagcctgttgtgggtggataaatatcgtccccgcagtctgaagaatctgatc
gggcagcagggggatcagagctgtgcgaacaaacttatacgatggttacagaactggcac
agacatcacggtggcaatggaaaagcaccaccggtcaagtttagtaagtttgggagcaaa
gatgacggttccgggttcaaggctgctctgttgtctggacctcctggtgtcgggaagacc
actactgctgctctcgtgtgtgaggagttgggttacagctacgtggagatgaatgccagt
tgcacccgcagcaagaacagcttaaaagaagtgattgccgaatcactcaacaacaccagc
attaagaacttctacaccggtgcatcaaagacagtaagcagtaaacatgtcctcataatg
gacgaggtggacgggatggcaggaaatgaagacagaggaggaatacaggagatgattggt
ctgataaagcagtcgaagattcccatcatctgcatgtgtaatgatcggaatcatcagaag
atccgctcgctggccaactattgctacgacctgcgctttcagagaccccgtgtggagcag
attaagggggcagtgatgtctatagctttcaaagaggggctgaagatcccaccaccagca
gttaatgaaatcatcctggcttccaatcaggatattcgacaggtgctgcataacctgagc
atgtggtctgctaaagataaagtcatgacctatgacggggtcaaagctgatgctaataat
gctaagaaggacatgaaactgggtccgtttgatgtgtgccgaaaggtattcgcctcggga
gaagaaaccgctcatatgtctttgattgacaagtcagaccttttcttccatgactactca
ttagcaccactttttgtgcaagagaactacatacacgtccgaccggtggcggcaggggga
aatctaaagaatcatttagtgttgttgagtaaagcagcagacagtatttgtgatggagat
ctagtggacaaacagatccgctccagacagacctggtctctgcttcccacacaggcgatc
tatgccagcgtgttgccaggggaactgatgcggggatatatgagtcagtttccaactttt
cccagctggttgggcaagttttcatcgactggcagatacagtcgcaccatccaggagctt
gcttcacacacaagtctaaagacgctaagcagtaaggaagcaataaatctggattatcta
ccgtatttgcgctctgcaatattggagccactgcagtctcaaggcgcagagggagccaat
cagagtgtgaagcttatggacgattatgacatcatcaaagaggatgttgataacataatg
gagatcagcacatggggcggacagccagatccttactccaaactagattctaaggtgaaa
gctgcgtttacacgggcatacaataaggaatctcatctaaccccttactccttacacgtt
gtcaagaaaagccgcaaaggagccgttgaccctgagctcgtcggagaacttggcggtgaa
tctcaggtccagggagaggaagaggatgatgacggggtcatcgcagatgccatgatcaag
cagaagaaagccaaaccagctaaaaaagatgccaagccggagaaagcaggggattctggg
aaggggaaaggcaaggggaaagggaagggaaagaccagaagaacataa
DBGET
integrated database retrieval system
