KEGG   Triplophysa dalaica: 130415243
Entry
130415243         CDS       T09616                                 
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
  KO
K06236  collagen type I alpha
Organism
tdw  Triplophysa dalaica
Pathway
tdw04510  Focal adhesion
tdw04512  ECM-receptor interaction
tdw04518  Integrin signaling
tdw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tdw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130415243 (col1a2)
   04518 Integrin signaling
    130415243 (col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130415243 (col1a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130415243 (col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tdw00536]
    130415243 (col1a2)
Glycosaminoglycan binding proteins [BR:tdw00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130415243 (col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 130415243
NCBI-ProteinID: XP_056596782
LinkDB
Position
25:6242636..6260237
AA seq 1352 aa
MLSFVDTRILLLLAVTSYLASCQSTPRGPKGPRGDRGPKGPNGKDGRPGFPGPAGPPGPP
GLGGNFAAQYDAGKGADPGPGPAGLQGPRGPAGPPGTPGPQGFQGHAGEPGEPGQGGPVG
ARGPPGPPGKNGEDGNNGRPGKPGDRGTPGPQGARGFPGTPGLPGMKGHRGYNGLDGRKG
EPGAAGSKGENGAPGGNGTPGQRGGRGLSGERGRAGPAGPAGARGADGNTGPSGPAGPLG
SAGPPGFPGSPGPKGEIGAAGASGPSGPQGQRGEPGQNGAVGPAGPLGNPGVNGINGAKG
AAGAPGIGGAPGFQGPRGGPGPQGPSGASGPRGLAGDPGPVGVKGDSGVKGEPGMVGPSG
APGPAGEEGKRGQTGEQGSTGPAGLRGQRGAAGTRGLPGVAGRSGPMGMPGARGATGSTG
ARGPAGDAGRAGEPGLTGARGLPGSPGSSGPPGKEGPVGTSGQDGRTGPPGPTGPRGQPG
NIGFPGPKGPGGEAGKAGEKGPSGPAGLRGLPGSDGNNGPSGPVGLVGSTGEKGEQGPSG
APGFQGIPGPAGIVGEAGKPGERGIPGDQGASGPAGVKGERGTPGLTGGAGSQGPIGNRG
PAGAPGPDGNKGEPGAVGMAGSPGHQGAAGMPGERGAAGTPGSKGEKGEGGYRGLEGNMG
RDGARGAPGPSGPPGPAGANGDKGETGSFGPPGPPGARGTPGERGESGPAGPSGFAGPPG
ADGQTGQRGEKGPAGGKGDIGPAGLSGPVGNSGPPGPTGLAGSPGARGDNGPSGLTGFPG
SAGRVGPPGPAGIVGPSGLTGPPGKDGPRGLRGDVGPAGPPGENGMVGPPGLSGEKGPSG
ETGVAGAPGTAGPQGQLGTLGFNGLPGARGDRGLPGAPGGVGEPGRLGPAGAPGARGPAG
NIGMPGMTGPQGEAGREGSPGNDGPPGRPGAAGLKGDRGEPGSPGPAGISGNPGPLGPSG
SVGRPGNRGESGPSGSSGPVGPAGARGAPGPAGSRGEKGVAGEKGERGMKGLRGHPGLQG
MPGPNGPSGDSGPAGISGPAGPRGPAGPNGPPGKDGSSGMPGPIGPSGHRGPAGHVGPVG
PPGTPGLPGPAGPAGGGYDTSGGYDEYRADQASLRPKDYEVDATIKSLNTQIDNLLTPEG
SKKNPARTCRDIRLTHPDWSSGFYWIDPNQGSTMDAIKAYCDFTTGHTCIYPHPESIPRK
NWYKSSQEKKHVWFGETINGGTEFGYNDETLSPQSMATQLAFMRLLANQAVQNITYHCKN
SIAYMDAENGNLKKAVLLQGSNDVELRAEGNSRFTFSVLEDGCSKRTGQWSKTVIEYRTN
KPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq 4059 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacttcatatctagca
tcatgtcaatcaacacccaggggaccaaaaggacccagaggtgacaggggtcctaaagga
ccaaatggaaaagatggcagacctggatttcctgggccagccggtcctcctggcccccct
ggtcttggtggaaactttgctgctcaatatgatgccggtaaaggagccgatcctggacct
ggacctgctggtctgcaaggacctagaggccctgctggacctcctggtacccctggacct
caaggattccaaggacatgctggtgagcccggagagccaggacagggtggacccgtaggt
gctcgtggccctcctggccctcctggcaaaaatggtgaagatggtaacaatggccgacct
ggaaaacctggtgatagaggaacccctggacctcagggtgcccgtggtttccccggaact
cctggccttccaggaatgaagggacacagaggttacaatggtcttgatggtcgtaaagga
gagcctggtgcagctggttctaagggagaaaatggtgctcctggaggaaatggaacccct
ggacagagaggtggtcgtggtctttctggtgagagaggtcgtgctggcccagctggtcca
gctggtgcccgcggtgctgatggcaacactggtccttctggccctgctggtcccttggga
tcagctggtcctcccggttttcccggttcccctggacctaagggagagattggagctgct
ggtgcctctggcccatctggacctcagggacaaagaggagagccaggtcaaaatggtgcc
gttggccctgccggaccccttggtaatcctggtgttaatggtatcaatggtgctaaggga
gcagctggtgcaccaggaattggtggcgcccctggtttccagggccctagaggaggacct
gggccccagggaccttctggagcctctggccctagaggtcttgctggtgaccccggccct
gttggagtgaagggagattctggtgttaagggtgagcctggtatggtgggtccttctggt
gctcctggtcctgctggtgaggagggcaagagaggccaaactggtgagcagggatctact
ggacctgccggtctgcgtggacaaagaggagctgctggtacccgtggtcttcctggcgtg
gctggaagatcaggaccaatgggcatgcctggagcccgtggtgccactggtagcaccgga
gctcgtggacctgcaggagatgctggtcgtgctggtgagcctggtcttactggagctaga
ggtctccctggaagccctggcagttctggaccccctggaaaggaagggcctgttggtacc
tctggtcaagatggccgcactggcccccctggcccaactgggccaagaggtcagcctggt
aacattggattccctggtcctaagggacctggtggtgaggctgggaaagcaggtgagaaa
ggaccttctgggcctgctggactgagaggtctccctggatctgatggtaacaacggccct
agtggtcctgttggacttgttggttccaccggtgagaaaggagaacagggtccctctggt
gctcctggtttccagggtatacctggccccgcaggaattgttggtgaggctggcaagccc
ggagaaagaggtatccctggagatcaaggtgcatcaggacctgctggtgtgaagggagag
cgtggtacccccggactcaccggaggtgctggttctcagggacccatcggtaaccgtggc
ccagctggtgctcctggccctgatggaaacaagggagagcctggtgctgttggaatggct
ggttcccctggacaccagggagcagctggtatgcctggtgagcgtggtgctgccggcact
cctggatctaagggtgagaagggtgaaggtggatatagaggactggagggcaatatggga
agagatggtgcccgtggtgctcctggacccagtggaccccctggacctgctggtgctaat
ggtgacaagggtgagactggctccttcggtcctcctggacctcctggtgctcgtggtact
cctggagagcgtggtgagtctgggcctgctggaccttccggttttgctggaccacctggt
gctgatggccagaccggacaaagaggtgagaaaggtcctgctggtggaaaaggtgacatt
ggacctgccggcctttctggtcctgttggcaattctggacctcccggccctactggcctt
gctggctcacctggtgcccgtggtgacaacggcccatctggtctgactggtttccctggt
tctgctggcagagttggaccacctggccctgctggtattgttggaccttctggtctcact
ggtcctcctggaaaagatggcccccgtggacttcgtggtgatgtcggccctgctggtccc
cctggagagaacggaatggttggacctcctggcctttctggtgagaagggaccctctgga
gagaccggtgtagctggagcacctggaactgctgggcctcagggtcagctgggaactctt
ggattcaatggacttcctggtgctagaggtgaccgtggtcttcctggtgcccccggtggt
gttggtgagcctggtagacttggccctgctggtgcccctggtgcgcgtggccctgctggc
aacatcggcatgcccggtatgactggacctcagggtgaagctggacgtgagggaagccct
ggtaatgatggacctcctggccgtcctggtgctgctggcctaaagggtgaccgtggtgag
cctggttcccccggacccgctggaatttctggaaaccctggaccccttggaccatcaggc
tctgttggcagacccggaaaccgtggtgaatctggaccctcaggttcttctggacccgtt
ggacctgctggagcaagaggtgcacctggacctgctggctctcgtggtgagaagggtgtt
gcaggagaaaaaggagaaaggggcatgaagggacttcgtgggcatcctggtctgcaggga
atgcccggacccaacggtccttccggtgactctggccctgctggtatttctggtcctgct
ggtccaagaggcccagctggtcccaacggcccccctggtaaggatggttcaagtggcatg
cctggtcctattggaccctctggacaccgtggtcctgccggacatgttggacctgttggt
cctcctggaactcctggtcttcccggacccgctggcccagctggtggtggatatgacacc
tctggtggctatgatgagtacagagctgaccaggcctctctcaggcccaaggactatgag
gtggatgccaccatcaagtctttgaacactcagattgacaatctgctcactcctgaggga
tccaagaagaaccctgcccgtacctgccgtgacatcagactcacccacccagattggagc
agcggcttctactggatcgaccccaaccagggcagcaccatggatgccatcaaggcctac
tgtgacttcaccaccggccacacctgtatctacccccaccccgagagcatcccacgcaag
aattggtacaaaagctcccaggagaagaaacacgtttggtttggcgagaccatcaatggt
ggaactgagtttggctacaatgacgagacccttagcccacagtccatggctactcagctg
gctttcatgcgtctgctggccaaccaggcagtccagaacatcacctaccactgcaagaac
agcattgcctacatggatgctgagaatggaaacctgaagaaggctgtgttgctgcagggc
tccaacgatgtcgagctcagggcagagggcaacagccgatttactttcagcgtcctggag
gatggatgcagtaaacgaactggccagtggagcaagacagtcattgaatacagaacaaat
aaaccatctcgtcttcccatcctcgacattgcacctttggacattggtggcgcagatcaa
gaatttggtttggacattggcccagtctgtttcaaataa

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