Triplophysa dalaica: 130415514
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Entry
130415514 CDS
T09616
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03013
Nucleocytoplasmic transport
tdw03015
mRNA surveillance pathway
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130415514 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
130415514 (ddx39b)
03015 mRNA surveillance pathway
130415514 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130415514 (ddx39b)
03041 Spliceosome [BR:
tdw03041
]
130415514 (ddx39b)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130415514 (ddx39b)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130415514 (ddx39b)
Spliceosome [BR:
tdw03041
]
Complex C
Other components
EJC/TREX
130415514 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130415514 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
130415514
NCBI-ProteinID:
XP_056597260
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All DBs
Position
25:592345..601708
Genome browser
AA seq
434 aa
AA seq
DB search
MTENDVENELLDYEEDEVDATGPGDVVIGHEGTISIRKEGVKGSYVSIHSSGFRDFLLKP
ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV
SVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTPG
RILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE
IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV
KSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIE
RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLNDVQDRFEVNISEL
PEEIDISSYIEQSR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgttgagaacgagcttttagactacgaggaggatgaggtggacgcg
accggtcctggagacgtggtaattggccacgaagggaccatatccatcaggaaggaaggg
gtcaaagggtcatacgtgtccatccactcctcaggattccgagatttccttcttaagccc
gagctcttgagagccatagtggactgtggattcgaacacccatctgaggtccagcatgag
tgtattcctcaggcgatattgggaatggatgtattatgtcaggccaagtctggaatgggt
aagactgctgtctttgtgttggccacccttcagcagctggagccagtgactggtcaggtg
tcggtgttagtcatgtgccataccagagagctggcgttccagatcagcaaagagtatgaa
cgcttttccaaatacatgcccagtgtcaaggtggcagtgttttttggtggtttatccata
aagaaggatgaggaggtgttgaagagagagagccctcacgtggtggtgggcacccctggt
cggatactagctctgtcccggaacaagagcctcaacctgagacacatcaagcacttcatc
ctggacgaatgtgacaagatgctggaacaacttgacatgcgacgtgacgtccaggaaatc
tttcgcatgacccctcatgagaagcaggtcatgatgttcagtgcgaccctgagcaaagag
atccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgacgag
accaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaatgagaag
aacaggaagctctttgatcttctggatgttttggagttcaaccaggtggtgatctttgtg
aagtcagtgcagcgttgcattgctctggctcagctgctagtggagcaaaactttccggcc
attgctattcatagagcaatgcctcaagacgaaagactggctcgatatcagcaatttaaa
gatttccagagacggatcctggtggccacaaacctgttcggccgaggtatggacatcgaa
agagtcaacattgccttcaactacgacatgcctgaagattcagacacgtacctacacagg
gtggcgagagctggcaggtttggaacgaaaggtctggccatcacattcgtgtcagatgaa
agtgacgcccgcactttgaatgatgttcaggacaggtttgaggtgaacatcagtgaactt
ccagaggagattgatatctcgtcatatatcgaacagtcacgataa
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