Triplophysa dalaica: 130417140
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Entry
130417140 CDS
T09616
Name
(RefSeq) embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
tdw
Triplophysa dalaica
Pathway
tdw03015
mRNA surveillance pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130417140
09123 Folding, sorting and degradation
03018 RNA degradation
130417140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130417140
03041 Spliceosome [BR:
tdw03041
]
130417140
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130417140
mRNA cycle factors
Stress granule specific factors
130417140
Spliceosome [BR:
tdw03041
]
Complex C
Other components
Complex C specific factors
130417140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_occluded
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
130417140
NCBI-ProteinID:
XP_056598419
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIGTMNGMLLNDRKVFVGHFKSRKERE
AEMGAKAMEFTNVYIKNFGEDVDTVKLKSIFSEFGKTLSVCVMTDERGRSRGFGFVNFEN
HEDARRAVAEMNGKDLNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKN
LDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASIRAIPGPAIPNTYQQSSGYYMTSVPQHQVRSY
YNTVPNLRPAPRWPAQAPRTQAPFPAEFVRQAMPRRPSTTISTVRQASTQVPQIVNNNQR
MANIGTQTAGGRTAGGAAVRGVSQYKYSAGVRNVHQVIHAPAPVVHQVAHNTEPAVHVRG
QEPLTASMLAAAPLKEQKQLLGERLYPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPE
SLHSKVEEAVAVLQAHQDKEITTKK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtccagcataccctttggcctctctgtatgtaggtgatcttcatcca
gatgtcactgaggccatgctctaccagaagttttcaccagctggacagatcatgtccatt
cgtgtttgccgtgatgttattacacgcaggtcccttggatatgcttatatcaacttccag
cagccggcagatgcggaatgtgcccttgacacaatgaactatgaagtcatcaagggtcgt
ccaataaggatcatgtggtcgcagcgagatccaggcctgagaaaatctggggtgggaaat
atctttatcaagaacatggatgagtctattgataacaaggctctctatgacactttttct
gcttttggtaacatcttgtcatgtaaggttgtttgtgatgaaaatggctcaaaaggttat
gggtttgtgcactttgagactcaggaagcagccaacagagctattgggactatgaacggc
atgcttctgaatgatcgtaaagtttttgtagggcattttaagtctcgtaaggagcgtgag
gcagagatgggggctaaagccatggagttcaccaacgtctacattaagaactttggtgaa
gatgttgacaccgtgaagttgaagagcatctttagcgaatttggtaagactctcagcgtt
tgtgtgatgactgatgaaaggggacgctctcgtggctttggtttcgtcaacttcgaaaac
catgaagatgccagaagggcagtagctgaaatgaatggcaaggacttgaatggcagggtg
ctgtatgtgggtagagctcagaagagactggagagacagggagaactcaaacgcaaattt
gagcaaataaagcaggagcgcatacaacggtaccagggggtgaatctttatgtaaagaat
ctagatgacagcattgatgatgagaagttgaggaaagagtttgcgccttatggaacaatt
actagtgcaaaggtaatgaccgatggggggcacagcaggggctttggctttgtgtgtttt
tcttctcctgaagaggccacgaaggcagtcactgaaatgaatggtcggatcgttagcacc
aaaccgctatatgtggcactcgcccaaagaaaagaagagcgaaaggccatccttaccaat
cagtacatgcagaggttagccagcattcgagccattcccggccctgccatacccaacact
taccagcagagctctggttactacatgacctctgtaccacagcatcaggttcgctcttat
tacaatactgtgccaaacctgcggcccgcaccacgctggccagcacaagctccaagaaca
caagctccattccctgctgagtttgtgagacaagcaatgccacgcagaccctccaccacc
ataagcacggtccgccaggcctccactcaggtccctcaaattgttaacaacaaccaacga
atggctaacattgggacacagacagctggtgggagaactgcaggaggagctgcagtcaga
ggagtcagtcagtataaatattctgccggagtccgtaatgtgcaccaggtcatccatgca
ccagctcctgtcgttcatcaggtggcacataatacagaacctgcggttcatgtgaggggt
caggagcctcttacagcctcaatgctggcagctgcacccttaaaagaacagaagcaacta
ctgggtgaacggttgtaccccctgatacaggctatgcatcccagccttgcggggaagatc
acaggtatgctgttggagattgacaactctgagttactgcacatgcttgagtctccagag
tctctgcactctaaggttgaagaggcagtagcggttcttcaggctcatcaggacaaggag
ataacaacgaagaagtga
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