Triplophysa dalaica: 130417166
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Entry
130417166 CDS
T09616
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04510
Focal adhesion
tdw04512
ECM-receptor interaction
tdw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130417166 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130417166 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130417166 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tdw04147
]
130417166 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130417166 (col4a6)
Exosome [BR:
tdw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130417166 (col4a6)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130417166 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130417166
NCBI-ProteinID:
XP_056598464
LinkDB
All DBs
Position
1:complement(10186652..10257018)
Genome browser
AA seq
1714 aa
AA seq
DB search
MKLWCWVLAVVLYAESAGAGTELSEPCAGRDCRGPCPCLPLKGGRGKPGSLGPPGIMGPE
GFVGGPGPIGPKGEAGHVGRRGPSGLKGDKGPMGVPGFSGNDGIPGHPGQQGSSGPPGLD
GCNGTQGDPGDGGRRGFTGRSGPSGLRGVKGQKGEPNYVNIPKPSPVKGPTGPIGFPGLT
GSRGPDGFPGVPGPPGLPGSPGSPGQGYKGDPGEKGDVGPQGDTGSPAVQFNAPPISSIN
KGEKGAVGLPGDPGRPLVNGVLEFVGFPKGDKGIKGDKGYAGAPGSIGEPGSPSPFGSRG
DFGEKGIPGLPGLRGLPGLNGPPGPSGTKGFPGSTGLSGQPGFYGTKGDRGEQGPPGPSF
GLAGGTPGPRGDPGIAGYPGRIGDQGFPGLPGPPGPPGFPSFDTGRPARPGPPGSRGVKG
EKGNPGRDTYGSEGFPGSLGFPGPPGPSGPPGEAPPAGELSIGSPGPRGLPGVRGPSGGS
GFKGFKGENGDCDCLGGSTIGERGPLGPPGAPGFLGLNGVKGEIGDPGFQGLSGLQGPNG
REGGQGFFGRKGQKGEPSFRQGKGPKGDRGRLGLAGAPGATGDPGRTGSSGFPGLPGQPG
DPGFGVTGDKGFPGIPGFKGRPGAVGEPGFGFPGAAGFKGSQGDPGFNGLPGPPGSPGLQ
GDSCGQAGLNDASLEEGGTELPCRIPGIPGEPGFLGRPGVPGPKGQLGPPAGRGRTGLDG
PKGERGNPGTGGFPGPQGFPGPRGDSGLPGVTNAGLQGTTGRNGFPGVPGAKGQPGEVLG
ATPGGPGLSGRPGEPGDKGQPGTPGSYGRPGTDGRDGFPGAKGERGLDGRGGSQGPPGPP
GEYVPGGIAGPRGPAGSNGFPGNAGFSGQKGTRGDPGLPGPGGIKGFPGLPGVPGSPGFR
GPPGPSGSGGRPGLPGRSGIKGVKGSLGLLGFPGFPGSPGVSGSPGIKGLPGLRAQDGST
GRGGAKGIKGDRGSPGVPGPPPPLIPKERLPKGEPGDPGSNGLPGFPGPRGDKGFQGQPG
RPGFPGLPGLADRVKGFPGQPGFPGIPGSSGFPGPKGSPGVIGFPGSTGLRGDDGAPGLQ
GFSGPQGQPGAKGEKGDTYSSPGVPGAKGIIGEPGYSGRPGLPGNVGDPGFSGPPGFQGQ
KGPRGEQGAPGFASQGVPGIRGLPGYPGANGRNGGPGLTGATGSPGGKGFRGSPGLDGLN
GLPGSKGQPGVPGVVEGGRPGAYGPAGLKGERGSSVAGAPGRPGERGIKGDNGFPGLRGY
PGNPGPPGPPSPSNIPGPFGDPGLPGLDGREGPTGPPGLPGPPGPGTVQGERGDAGYPGP
PGTPGPRGDPGISGSPGFAGRPGFKGQRGDPGYSGKDGPPGDIGEPGSYGSRGLKGERGY
PGPKGRPGYVYQTGNSTAIAQPGDPGLPGRRGPIGQSGIPGVPGSPGPSGPKGVRGSQGR
LGPAGPSGSSGLSGDPGASGFQGPTGPQGPRGQPGLPGPPSTPSRSVSVGFTLVKHSQSS
FVPMCPQGMDKLWEGYSLLYVEGQEKAHNQDLGLPGSCLPYFSTIPFLYCTPNEICHYAS
RNDKSYWLSTTAPIPMMPVAGQQISQYISRCSVCEVPSRAVAVHSQDLTIPTCPQGWRSL
WIGYSFLMHTAAGGEGGGQSLMSPGSCLEDFRATPFIECNGAQGTCHYFLNKYSFWLTTV
NQNEQFSDGPTGETLKGDQYRSRVSRCQVCMKIL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgaaactttggtgttgggtgttagctgttgtcttgtatgcagaatctgcaggcgcgggg
acagagctctcggagccatgtgctggaagagactgcaggggaccgtgtccatgtttaccc
ttaaagggtggcagggggaagccagggtcactaggtccaccagggatcatgggtcctgag
ggattcgtcggtggaccggggcctattgggccaaagggtgaagcgggtcatgtgggacgc
agaggaccctctggactaaagggggacaagggcccaatgggtgttcctgggttcagtggt
aatgatggcattcctggacaccctggtcaacaggggtccagcggacctccaggacttgac
gggtgtaatggcacacaaggtgacccaggtgatggaggacgtaggggatttaccggtaga
tctggaccctcgggattgcgtggtgtaaaaggacaaaaaggagaaccaaattatgtaaac
attcctaaaccatccccagtgaaaggccctacaggtccaataggatttccaggtctaaca
gggtccagaggtccggatgggtttcctggtgtgcctggtccacctggtcttccaggatcc
ccaggtagccccggccaaggatataaaggagaccccggagaaaagggggatgttggtcca
caaggagacactggtagcccggccgttcagtttaacgctccaccaataagcagtatcaac
aaaggagagaagggagctgtgggcctgcccggtgacccaggccgcccactggtcaatgga
gtactggagtttgttggctttcccaaaggagacaaaggaataaagggtgataaaggttat
gccggagcaccgggtagcattggggaaccaggatcaccaagcccatttggttctagagga
gactttggtgaaaagggaattccaggattgccaggattaaggggtcttccgggtttgaat
ggacctcctggaccttcaggcactaaaggctttcctgggagtactggactttcgggccaa
ccaggcttttatggcacaaaaggtgatagaggagaacaaggtccacctggaccatccttt
ggactagcaggtggaactccaggtccacggggtgatcctgggattgctggttatcctggg
cgaattggagatcaaggttttccaggtcttccaggtccacctggtcctcctggatttcct
tcgtttgacacaggacgcccagcaagacctgggccccctgggagtcgtggagttaaagga
gagaagggaaacccaggccgggatacatatggctctgaaggttttcctggaagcctgggc
tttcctggacccccaggtccctctggaccacctggtgaagcacctcctgcaggtgagctc
tcaatagggtcaccgggacccagaggtctgccaggtgtaagaggtccatctggaggcagc
ggatttaaaggatttaaaggagaaaatggcgactgtgattgtttgggtggcagcactatt
ggtgaacgaggacctctagggcctccgggggccccaggtttcttaggactgaatggtgtg
aagggcgaaattggtgacccgggattccaaggactcagtgggctgcagggcccgaatggg
cgtgagggtggtcaaggctttttcgggcgtaaaggacagaaaggtgaaccctctttccgt
caaggtaaaggaccaaaaggtgataggggtcggctgggtcttgctggggcacctggagca
actggcgaccccggaaggactgggtcttctggtttccctggactaccaggccaacctggg
gatcctggttttggagtgaccggagataaaggttttcctggtatcccaggattcaaagga
cgtcctggtgcagttggagagcctggctttggttttcctggtgcagctgggttcaaaggg
tcacaaggtgaccctggattcaatggccttcctgggccacctggatctccagggcttcaa
ggtgacagctgtgggcaggcggggcttaatgatgcctctttggaagagggaggaacagaa
ctgccctgtaggattcctggaattcctggagaacctggatttcttggacgtcctggagtg
ccagggccaaagggtcagcttggtcccccggcaggtagaggacggacagggctagatggg
ccaaagggtgagagaggaaacccaggcactggaggttttcctggtcctcagggttttcct
ggacccagaggagattcaggtctaccaggagtaacaaatgctggcttacaaggaactaca
ggaagaaacggttttccaggtgtgcccggggcaaagggacaacctggtgaggttcttggg
gcgacccctggaggtccaggactttcaggaaggccaggagagccaggagacaagggtcaa
cctgggacacctggatcatatggaaggcctggtactgatggccgcgatggatttcctggg
gcaaagggtgaacggggtttggatggaagaggtggctctcaaggcccgccaggtccacca
ggcgaatatgttcctgggggtattgctggacctaggggcccggctggatctaatgggttt
cctggaaatgcaggattctctggtcaaaagggtacgagaggagatccaggccttccaggg
cctggtggaataaaaggttttcctggattacctggtgtgccagggtcaccgggatttagg
ggacctcctggaccctctggttctggaggccgcccaggcctgcctggaagatctggaata
aagggggttaaagggtctctagggttattgggattccctggatttcctggttctcctgga
gtatcaggtagcccaggtattaaaggcttgccaggtttaagagcacaggatggttcaact
ggaagaggcggagcgaaaggaatcaaaggggatcgtggatctccgggtgttccaggaccc
cctcctccattgattccaaaagagcggctgccaaagggtgaaccaggtgacccaggaagc
aacggactgcctggttttccaggaccaagaggtgataaaggttttcaggggcaacctgga
cgtccaggctttcctggactacctggtctggcagaccgagtgaaaggttttcctggccag
cctggattcccaggcattcctggttcgtctggttttccagggccaaaaggatcaccaggt
gtcattggctttccaggctcaaccggtctgaggggtgatgatggtgcacctggacttcaa
gggttttcaggacctcaaggacagcctggtgccaaaggtgagaaaggtgacacctattca
tcacctggggtccctggagccaaaggtattattggagagcctggatattctggtcgtcct
gggcttcctggtaatgtgggtgaccctggtttctcaggaccccctggatttcaaggccag
aaaggtcctcgtggggagcaaggagcaccgggatttgcctcacaaggtgtcccgggcatt
agaggtctgcccggttatccaggagcgaatgggcgtaatggagggccaggccttactgga
gctacaggctcacccggagggaaaggttttcgagggtcacctggtttagatggcctcaat
ggtcttccaggatccaaggggcagcctggagttccaggtgtggttgaaggcggtcggcct
ggtgcttatggtccagctggcctgaagggagaaagaggctcatcggtggcgggagcccct
ggacgccctggagaaaggggaatcaaaggagacaatggttttcctgggttgagaggctac
cctggaaatccgggccctcctggcccacctagtccctctaacatcccgggtcctttcgga
gaccctggacttccaggattagacggacgggaaggtcccactggtcctcctggtctccct
ggtccaccaggccctggaacggttcaaggagagagaggagatgctggttatcctggacca
ccaggtacaccaggaccacgtggagaccctggtatttctgggtccccgggatttgccggc
cgtcctggtttcaaaggacaaagaggtgatcctggctatagtggtaaagatggaccacca
ggagacataggagaaccagggagttatggcagcagaggattgaaaggggaaaggggttat
cctggtcctaaggggagaccaggttatgtctaccaaacgggaaactcaactgctattgca
cagcctggtgatcctggcctcccgggtcgtcgtgggcctattggtcagtcaggaatacca
ggcgtgccaggcagtccaggaccctcaggtcccaaaggtgtgagggggtcacaaggcaga
ctcggtccagccggtccttctggatcttcaggactctccggtgaccccggggcttcagga
ttccaaggaccaacaggacctcaaggaccccgcggccagccagggttgccaggtcctcct
agtacaccgtcacgcagtgtcagtgttggttttactctggtaaaacacagtcagtccagc
ttcgtccccatgtgtcctcaaggcatggataagttgtgggagggctacagtttgctctac
gtggagggacaggagaaagcacacaaccaagatctgggattacctgggtcctgcctacct
tatttcagcaccatccctttcctgtactgcacacccaacgaaatttgtcactatgctagc
cgcaacgataaatcctattggctatccaccacggcgcctattcctatgatgcctgtagca
ggtcagcagatatcccagtacatcagccgctgctcagtgtgcgaggttccatctcgagca
gtcgctgtacatagccaggatctcaccatacctacctgtcctcagggctggagaagtctg
tggattggttactccttccttatgcacacagccgcaggtggggaaggtggaggccagtct
ttaatgtcacccggttcttgtctggaggatttccgtgccacacccttcatcgagtgcaat
ggtgctcaaggcacatgtcactattttctcaacaagtacagtttctggctgaccacggtg
aatcagaatgaacagttctccgatggtccgaccggggaaacactgaaaggagatcagtat
cgctcacgagtcagtcgctgtcaagtctgcatgaagatcttgtga
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