Triplophysa dalaica: 130418877
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Entry
130418877 CDS
T09616
Symbol
snx1b
Name
(RefSeq) sorting nexin-1
KO
K17917
sorting nexin-1/2
Organism
tdw
Triplophysa dalaica
Pathway
tdw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130418877 (snx1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130418877 (snx1b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tdw04990
]
130418877 (snx1b)
Membrane trafficking [BR:
tdw04131
]
Endocytosis
Macropinocytosis
Sorting nexins
130418877 (snx1b)
Domain-containing proteins not elsewhere classified [BR:
tdw04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
130418877 (snx1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
BAR_3_WASP_bdg
FAM92
4HB_MCP_1
YgaB
DUF7341
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
130418877
NCBI-ProteinID:
XP_056601036
LinkDB
All DBs
Position
1:15879905..15887663
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AA seq
521 aa
AA seq
DB search
MSASCGRNPPPFPDNDDQEAELDTRVLDSDEDDDEGEDIFTGASSKPITPTSAPEEADIF
SEEGSRIHHTTNGLHSDEELDLFTEATVELTLTNTTSQGRREIIGPTALACNTAHVRNSI
HKPSIVNKTTEELEEEESKDQFELNVAVTNPEKMGDGMNAYMSYKVSTQTTLPMFRSKTF
SVRRRFSDFLGLYEKLSAKHSLIGCIIPPPPQKSVVGMTKVKVGKEDSSSAEFVEKRRSA
LERYLQRVAAHPSLLQDPDVREFLERDELPRAVNTQTLSGPGLLKMINRASDAVNKKTVK
MNESDNWFESKLQEVENEEQLLRKLHTAVDSLVNHRKELCSNTAVFSKSVAMLGSVEENT
ALSRALSQLAEVEDKLEQLQHQQAFSDFFILAELLADYVRLLGAVRCCFEQRMKAWQRLQ
EAQSTLQRKREAEAKLLWANKPDKLQQAKDDINEWESKVNQYERDFERVTCTVRKEVLRF
EKEKTRDFKQHILKYIESLLHTQHRLVKCWEAFLPEAKAIA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccagctgcgggcggaatcctccgcctttccccgataatgacgatcaggaggct
gaattagatactcgagtcctggacagcgacgaggatgatgatgaaggggaagacatattc
accggggcgagtagtaaaccgatcacacccacatccgctcccgaagaggctgatatattc
agtgaggaggggtctcgtattcatcacaccactaatggtcttcactcggatgaagaactg
gatctgttcactgaagccactgtagaactgacgcttaccaacaccactagtcaaggcagg
cgagagattatcggcccgaccgcattggcatgcaacaccgcacatgtccgtaattccatt
cacaaacccagtattgtcaacaagaccacggaggagctggaggaggaagaaagcaaagat
cagtttgagctgaacgttgcggtcaccaacccagagaaaatgggtgatggcatgaatgcc
tacatgtcctacaaagtgtcaactcagacgacactgcccatgtttcgtagtaagacattc
tcagtgcgccggcgtttcagtgattttcttggactttatgagaagctgtctgcaaagcat
tccctgataggctgcataatccctcccccacctcagaagagcgtagtgggaatgactaaa
gtgaaggtggggaaggaggattcatcctctgctgagtttgtggagaagagacgatcagcg
ctggagaggtatctgcagagggtagcagcccatccatctcttctgcaggaccctgatgtt
cgcgaatttttagaaagagacgagttgcccagggcggtgaatactcagactttgagtgga
cctggtctgttaaagatgataaacagagcgtcagatgcagtcaataagaagaccgttaaa
atgaatgaatcagataattggtttgagagtaagctgcaggaagtggagaatgaggagcaa
ctgcttaggaaactccacactgctgttgactctttagttaaccataggaaagagctgtgc
tctaacacagcggtgttcagtaagagtgtggcgatgctgggtagtgtggaggagaacact
gcgctgtctcgtgcgctgtcacagctggcagaggtggaggataagttggagcagctacag
caccaacaggcattcagtgatttcttcatcctagcagagctgctggccgactacgtccga
ctgctgggagccgtgaggtgctgttttgagcaaaggatgaaggcatggcagcgtctgcag
gaagctcagagcacccttcagaggaaacgagaggctgaggccaaactgctgtgggcaaac
aaacccgacaagcttcagcaggctaaagatgacataaatgagtgggagtctaaagtcaat
cagtacgagagagattttgaaagagtcacctgtactgtgcgtaaagaggtgctcaggttt
gagaaagagaaaaccagagattttaaacagcacattctgaaatacattgaatccctactt
cacacacagcatcggcttgtaaaatgctgggaggccttcctgcctgaggctaaagctatc
gcctga
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