Triplophysa dalaica: 130418993
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Entry
130418993 CDS
T09616
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130418993 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130418993 (lig3)
Enzymes [BR:
tdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130418993 (lig3)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
130418993 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130418993
NCBI-ProteinID:
XP_056601299
LinkDB
All DBs
Position
4:4881894..4890733
Genome browser
AA seq
1010 aa
AA seq
DB search
MFSLCLGKAVRSFSTSSIPVLCRLSLLRRQYLHCSRIVIFSWDFPSSPSSISFCVPQTRR
FTLGSGSHFHTSWPNKLQSNQPEMAEQRFCVEYAKRGTAGCKKCKDKIVKGVVRIGKIVP
NPFSESAGEMKEWYHVKCMFEKLERARATTKKIEDITELEGWEELQDEDKELINKHVSEL
AAKTNASPKKKVQAKLNNSGQVSGPQADPTVNAPRKFSGFTATKAGSSSSSPGPSPAKPS
QGSALSAKLCDSNHKDCLLREFRKLCALVAEKSGYNAKTEIIRDFLTKGSGGDKFRGDLY
LTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRMFFEASKSF
PPATKSLLTLQEVEASLNRLAQLTKEDDQQTELQDIAKKCTGNDLKCYIRLVKHDLKINS
GAKHVLDAVDPNAYDAFKASRNLGDVIDRVLKNHQDAANGTGPRKILSVEASLMTPVQPM
LAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDF
IPQAFPGGNSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFNGIS
LMDKPLCERRKFLHDNMVEVQNRILFSEMKHVTRGADLAEMITRVIREGLEGLVLKDVKG
LYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESKKWC
TVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFITRDPQKAPVWEI
TGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVTAGP
SKTGRNDKSSSGGESGGSSPSTSSTIASTANKPKNGHTPKAKMVKSEPPSRAVKRTLPPE
KHHAKKIKTEAVHSNGEGKLNTSIQTSHPKNEKTLLDIFTGVKLYLPESVQDFAKLRRYY
LAYDGDLVPEFDSRSATHTLTEPEGDSQSQKVTSNWIWECIRKRRVVPPC
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtctttgcttaggcaaagcagtaaggagcttctccacatcatccatcccagtt
ctttgtaggctatctttattacgccgtcaatatctccactgctctaggattgtaatattt
agttgggactttccttctagtcccagtagcatctctttctgtgtgccacaaacacgacga
tttactctcggctctggttcacatttccacacttcctggccaaataagttgcaaagtaac
cagccagagatggcggagcaaagattctgtgtagaatatgccaaacgtggcactgcaggc
tgcaagaaatgcaaagacaagattgtgaagggagtggtccgtattggcaagatagtgcca
aatccattcagcgagtctgctggagaaatgaaagagtggtaccatgtgaaatgcatgttc
gagaagcttgagagagctcgtgccaccacaaagaaaatcgaagacatcacagaactggag
ggatgggaggagcttcaggatgaggataaagaacttatcaataaacatgtttcagaattg
gcagccaaaaccaatgcaagtccgaagaaaaaagtgcaagccaagttaaacaacagcgga
caggtgtcaggaccacaagctgacccaactgttaatgcccctcgcaagttttcaggcttc
acagctaccaaggctggttcttcatcctccagtcctgggccatctccagcgaaaccctct
cagggcagtgctttatcagctaagctatgtgactcaaatcataaagactgcttactgcga
gagtttcgcaaactgtgtgccttagtggcagagaagtcaggttacaatgcaaagactgag
attatcagggatttcttgacaaaaggctctggtggagataagtttagaggagatctgtac
ctgacagtgaagctgcttctcccaggagtggtgaagaatgtctacaacctcaatgacaaa
caaattgtaaagcttttcagccgcatattgaattgcagtcaggatgaaatggtgcaagat
ctggaacagggagatgtttcagagactgtgcggatgttttttgaggccagcaaatctttc
cccccagcaaccaaaagccttctgacccttcaggaagtggaagcttcactgaatcgtctt
gcccagctcaccaaggaagatgatcagcagacagaactacaagatattgctaaaaaatgc
accggaaatgacctgaagtgttacatccgtctggtcaaacatgatctgaaaataaactct
ggtgctaagcatgtcctggatgctgtcgatcccaatgcttacgacgccttcaaagcctct
cgtaaccttggagatgtaattgacagggttctaaagaaccaccaagatgccgccaacggg
acggggcccagaaagatccttagtgtggaggcgtctttgatgacacctgtacagccaatg
ctggcagaggcatgtaaatccattgagtatgccatgaagaagtgtcccaatggcatgtac
tccgaaatcaagtatgatggtgagcgagtacaggtccataagaacggagatcacttcagt
tacttcagtcgtagtctcaaaccagtactcccacacaaggttgctcattttaaagacttc
ataccgcaggcatttcctggtggtaatagcatgattcttgatgctgaagttctacttatt
gacacaaagactagtaaaccgctaccctttggaactcttggagtgcacaagaaagctgct
ttccaggatgctcaagtgggtctttttgtgtttgactgcatttattttaatggcataagc
ctcatggacaaacccctctgtgagagaagaaagtttcttcatgacaatatggtggaagta
cagaacaggattctgttctcagaaatgaagcatgttacgagaggtgctgatttggcagaa
atgatcacacgtgtcatcagagagggactggagggattggttctgaaagatgtcaagggc
ctttatgagccaggaaagcgtcactggttaaaagtaaagaaggattatctgaatgaagga
gcgatggcagatactgctgatcttgttgtgcttggagctttctatggcaaaggctcaaat
ggtggaattatgtcaagtttcctcatgggctgctatgacccagaatccaagaagtggtgc
accgtgaccaagtgttccggaggctatgatgacgcaaccttagccagactgcagaaggag
ctggatgttatcaaaatcggcaaagatccaagcaagataccagggtggttgaagattgtc
aagaactattatccagactttattacccgagatccacaaaaagcaccagtttgggaaatc
acaggagcagagttttctaaatcagaaatgcacacagcggacggcatatccatccgcttc
cctcgctgcacgcggatgcgagatgacaaagattggaaaaccgccactaatcttcagcag
ctcaaggaactgtatcgcatctccaaggaaaactgtgattttgaggtgacagccggtcca
tctaaaaccggccggaatgacaagagctcctcaggaggtgagagcggtggcagctctccc
tcaacatcttctactatagcatctacggcgaacaaacccaaaaacggtcatacccccaaa
gcaaagatggtgaaatccgaaccaccctcacgagcagttaagaggacactaccacctgaa
aaacatcatgcaaagaagataaaaaccgaagctgttcacagcaatggagaaggcaaactc
aacacatcaattcaaacatcccacccaaagaatgaaaagactttactggacatttttaca
ggggtgaagctctaccttcccgagtcggttcaagactttgctaagctccgacgctactac
ttggcatatgatggagacttagtgccagagtttgactcgcgttcagccacacacacgctg
acagagccagagggggacagtcaaagccagaaagtcacttccaactggatctgggaatgt
atacgcaagagaagagtggttcctccctgttga
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