Triplophysa dalaica: 130419001
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Entry
130419001 CDS
T09616
Symbol
smarca1
Name
(RefSeq) probable global transcription activator SNF2L1 isoform X1
KO
K11727
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130419001 (smarca1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tdw03036
]
130419001 (smarca1)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Chromatin remodeling factors
NuRF complex
130419001 (smarca1)
CERF complex
130419001 (smarca1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
CHDII_SANT-like
AAA_14
Motif
Other DBs
NCBI-GeneID:
130419001
NCBI-ProteinID:
XP_056601309
LinkDB
All DBs
Position
4:10200314..10216188
Genome browser
AA seq
1038 aa
AA seq
DB search
MSDEELPSTSREVHAEKEEEDPPFLLGPPPKAAVKESQVDPEYEEKRRLLCTYLRDDRDR
SRRTTFWNRKTDRANRFEFLLKQTELFAHFIQPASQKSPTSPLKVKVGRPRIKQDEKQNL
LSVADNRHRRTEQEEDEELLSESRRASNVLVRFEESPSYVKNGTLRDYQIRGLNWMISLY
ENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTL
KAVCLIGDKDERAAFIRDVMMPGEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKN
EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDTNNCL
GDTKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDIL
NSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVINSGKMVALDKLLPKV
QEQGSRVLIFSQMTRVLDILEDYCMWRGYEYCRLDGNTPHEAREQAIDAFNATNSSKFLF
MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKPVKVFRLITENTVEE
RIVERAEMKLRLDSIVIQQGRLIDQQNKLGKDEMLQMIRHGATHVFASKDSELTDEEIDT
ILERGAKKTAEMNERMKKLGESSLRTFTVDTGATETSLYNFEGEDYREKQKLSLIEWIEP
PKRERKANYAVDAYFREALRVSEPRAPKAPRPPRQPNIQDFQFFPPRLFELLEMEILYYR
KTIAYKVPRNPDIPNSAQLQKEEQAKIDEAEPLSPEETEEKEKLLTQGFTNWNKRDFNQF
IKANEKYGRDDIDNIARDVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQR
RISIKKALDVKIARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKEYVYEEL
RQCVRNAPQFRFDWFIKSRTAMELQRRCNTLISLIEKENMEIEEKERAEKKRRTPKGQSA
QKRKAEVPCDRKEKKSRT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgaagagctaccgtctacttctcgggaggtgcacgcggagaaagaggaggag
gacccgccattcctcctaggcccccctcctaaagctgcggtgaaggagagccaggtggac
cccgagtatgaggaaaaaagaaggcttctgtgcacatatttgagggatgacagagacagg
agtagaaggaccacgttttggaataggaaaacggaccgtgcaaaccggttcgagttcctg
ttgaagcagacagaactattcgctcatttcattcagcccgccagtcagaagtcccccacc
tcgcccctgaaggtgaaagtagggagaccacgaatcaaacaggatgagaaacagaacctc
ttgtctgttgcagataaccgccatcgtcggacagagcaggaggaagatgaggaactgtta
tctgagagcagaagggcctctaacgttcttgttcgatttgaggagtccccttcatatgta
aagaacggaacgttgagagattatcagatcagaggtttgaactggatgatttctctctat
gagaacggcatcaatggcattctggctgatgagatgggtctgggtaaaaccctgcagacg
attgcgttgctaggctacctgaaacactacaggaacattccaggtccccacatggtccta
gtgcccaaatcaacccttcataactggatgaatgaatttaagcgctgggtacccacccta
aaggctgtctgtctcatcggggataaagatgaaagagcagcattcattcgtgacgtgatg
atgcctggagagtgggatgtgtgcgtgacatcgtacgaaatggtgatccgggagaaatcc
gtctttaagaagtttaactggcggtatctcgttatcgacgaggcccatcgcatcaaaaac
gagaaatcaaagttgtcagagattgtgcgggagtttaagacaaccaatcgtctgctgttg
actggaaccccactacagaataatctacatgagctctggtcgcttttgaacttcctgctg
cctgatgtgttcaattctgccagcgattttgattcatggtttgacacaaataactgcctt
ggtgacacgaagctggttgaaagacttcatgctgttctgcgtccgttcctgctgcgtcgt
atcaaagcggaggtggagaaaagtcttccacccaagaaggaggtgaagatttacctggga
ctcagtaaaatgcagagagaatggtacacgcgtatcttgatgaaagatatcgacatccta
aactcagcaggaaagatggataagatgcggcttctgaatatattgatgcagcttcggaaa
tgctgcaaccatccgtacctttttgatggggcggagcctggtcccccctacaccacagac
acacacttggtcatcaatagcggcaagatggttgcattggataaacttctgcctaaagta
caagagcaaggttccagagtattaatattcagccagatgacacgcgtgttggatattctg
gaagattactgcatgtggagagggtatgaatactgcagactggatggtaacactcctcat
gaggccagagagcaagccatagatgcttttaacgcaacaaacagcagcaagtttctcttc
atgctgagcacacgagcaggtgggctggggattaatttggctacagctgatgttgtgatt
ctgtacgactcggactggaacccacaggtggacctgcaggccatggaccgcgctcaccga
atcggacaaacaaaaccagttaaagtgttcagactgatcacagaaaacacagtagaggag
cgaatcgtggagagagcagagatgaagttacggctggactccatagtcatacagcaggga
cggctgattgaccagcagaataaattggggaaagatgaaatgctacaaatgatccggcat
ggagcaacgcacgtgttcgcctctaaagacagtgaactcacggatgaagaaattgacacc
attctggagagaggtgcaaagaagacggccgagatgaacgaacgcatgaagaagctgggc
gagagctcgctgagaacctttacagtggacacaggtgcaaccgagaccagcctttacaac
tttgaaggagaagattacagagagaaacagaaactgagtttgattgaatggattgagccg
ccgaagagagaaaggaaggccaattatgctgtggatgcttacttcagagaagcgctgcga
gtcagcgagccaagagccccaaaggctcctcggcctcccaggcagcccaacatccaggac
tttcagttctttcctccacgtctctttgagctcttggagatggagattctctactacaga
aaaaccattgcatacaaggttccacgaaatcctgacattccaaattcagcacagctccag
aaagaggaacaagcaaagatagacgaggctgagcccctctctcccgaagagacagaggag
aaagagaagctactcacacaaggtttcaccaactggaacaagcgtgatttcaatcagttt
attaaagccaatgagaagtacggtcgtgatgacatcgacaacatcgctagagatgtggaa
gggaagacccctgaggaggtcatggagtactctgctgtgttttgggaacgatgtaatgag
cttcaggacatcgagaagatcatggctcagatagagcgaggagaagctcgcatccaaaga
cgcattagcatcaaaaaagccctggacgtcaagatagcacgctacaaggctccattccac
cagctccgcatccagtacggcacgaacaaaggaaagaactacacagaggaggaggacagg
tttttgatctgtatgctgcataaaatgggatttgataaagaatacgtatatgaagaactt
cgacagtgtgtacgaaatgccccacagttcagatttgactggttcatcaagtccaggact
gccatggagctccagcgtcgctgcaacacgctcatttctctcattgagaaagagaacatg
gagatagaggaaaaagagcgagccgagaagaagaggcgaacacccaaaggacaatcagct
cagaagcggaaagccgaagtgccctgtgacaggaaagagaaaaaatctcgaacctga
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