Triplophysa dalaica: 130419192
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Entry
130419192 CDS
T09616
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tdw
Triplophysa dalaica
Pathway
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130419192 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdw03041
]
130419192 (prpf4)
Spliceosome [BR:
tdw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130419192 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
130419192
NCBI-ProteinID:
XP_056601694
LinkDB
All DBs
Position
4:5482008..5486091
Genome browser
AA seq
506 aa
AA seq
DB search
MSDEDDAPVVKRTRIFYGSLEEKEKERLSRDGTTSAKDAVKAGIKAGHINISSGESMEME
ERVSERQAEVLADFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPADRRERLRTV
LSVIGPDALKKSKKEEEKIKRTQEEYQQTWYHEGPSSLKEARLWLVKYSLPRAVERLDAA
RAHKEIPESTRTVRQQELHKSLRNVNNFCSQIGDDRPISYCQFSPNSKMLVTASWSGLCK
LWNVPDCTLVRTLRGHNTNVGAISFHPQATLTLDESDVNMASCAADGSVKLWSLDSDEPV
ADIEGHSMRVARVAWHPSGRFLGTTCYDCSWRLWDLEVQEEILHQEGHSKGVHDLDFHPD
GSLAGTGGLDSFARVWDLRTGRCVMFLEGHLKEVYGISFSPNGYHVATGSGDHTCKVWDL
RQRRCIYTIPAHQNLLSSVKFQPTDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GLDLSPDGQLIATCSYDRTFKLWMAE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaagacgatgccccagttgtgaaaaggaccaggatcttctatggaagtctt
gaagaaaaggagaaggaacgcctcagccgagatggaacaacttctgctaaagatgcggtt
aaggctggcatcaaggctggacatattaatatctccagcggtgagtccatggaaatggag
gaacgcgtaagcgagcgacaggctgaagtattggcagactttgagcgcagaaagcgagcc
agacaaatcaccgtctccaccgatgatgttgaggtcaaggcctgtctccgagctcttgga
gagccaatcacgctgtttggggaaggacctgcggatagacgagaaagattgcggaccgtt
ctttcagtgatcggtcctgacgctttgaagaaatcaaagaaagaagaggagaaaataaag
cgcacgcaagaagaatatcagcagacgtggtaccatgaaggtccttcctctctgaaggag
gcgcgtctgtggttggtgaagtattcattgcccagagcagtggagaggttagatgccgca
agagcccacaaggaaattccagaatctacaagaacagtacgacaacaagagcttcacaag
agcctccggaatgtgaataacttctgcagtcagattggcgatgaccgtccaatatcctac
tgccagtttagccccaactctaagatgctggtgactgcatcttggagtggtttgtgtaaa
ttgtggaacgtcccagactgtacactcgtgcgcacactaaggggtcacaataccaatgtt
ggagcgattagctttcaccctcaagccacgctgacactggacgagtcagatgtcaatatg
gcctcctgtgcggcggacggctcggttaagctgtggagtttagacagtgatgagcctgta
gcagatattgaaggacactctatgagggtggcacgggtagcctggcacccatctgggcgt
tttttgggcacaacttgctatgattgctcatggcgattgtgggatcttgaagttcaagaa
gaaattttgcatcaggaaggtcacagtaaaggagtccatgaccttgactttcacccggat
ggctcgcttgcaggaactgggggtctggactcatttgctcgtgtctgggacctgcgtacc
ggtcgttgtgtgatgttcctagaaggtcatttaaaagaggtttatggcatcagcttctca
ccaaacggctaccatgtggcaacaggaagtggagatcatacctgtaaagtgtgggacctc
cggcagagacgttgtatatacacgattcccgcccatcagaatctcctgtcatccgtcaag
tttcagcctacggacgggcatttcttgctgactggtgcctatgacaacacagccaaggtg
tggactcatccaggctggtctcctctgaagactctggcgggacatgagggaaaggttatg
gggcttgacctttcacctgacggacaacttattgcaacctgctcttatgaccgaaccttc
aaactctggatggcagaataa
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integrated database retrieval system
