Triplophysa dalaica: 130419655
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Entry
130419655 CDS
T09616
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130419655
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130419655
BRITE hierarchy
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130419655
NCBI-ProteinID:
XP_056602521
EnsemblRapid:
ENSTDLG00000005804
LinkDB
All DBs
Position
1:complement(4140086..4287352)
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AA seq
684 aa
AA seq
DB search
MRGLEANKESRSAVKMESDTGAGKRRHCLKGAVDVIPFVFSVVSFAFCFLLSVQNSDIKE
RVVDLEIGSGARLLSPLNGLTMDQFNAMVQEKVDTLLSQRSYEHLARVRTVRETSPDCNC
PPGPPGKRGRRGRDGDPGPPGTPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLSGDPGSPGEFGQMGPEGPPG
QMGAIGPPGTDGIKGDMGMTGLDGIPGAKGDRGERGEKGDMGEDGPKGESGEKGDAGSSA
AGIKGEPGEPGRGGHKGEPGLPGLPGLPGIKGEPGFYGPQGEPGLPGLPGTKGERGEPGP
PGKGERGETGPAGHKGEPGEPGTLGPKGYKGDTGDKGDFGQEGPQGPPGDKGDQGTTEII
DYNGNIQEALQKITTITVTGPPGPPGPVGPKGVKGDQGVPGLPGLDGERGHKGSKGDMGI
PGISGEKGAMGLPGLQGLSGLKGDKGDGGLSGPQGPSIIGPPGALGPHGPPGPMGPHGYP
GPKGEPGVHGLKGLRGEPGHKGDRGPLGLPGASGSDGKPGPRGVDGPVGASGPAGPKGDR
GEKGDVGDPGPRGPYGLPGAAGTPGLDGLPGLKGDKGVEGERGEKGFRGLKGEKGDPGQP
GLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtctagaggcaaataaggagtcccggagcgcggtgaaaatggagagcgacacc
ggtgctggcaagcggcggcactgtcttaaaggtgccgtggatgtgataccgtttgtcttt
tctgtcgtgtcctttgccttttgctttttactgagtgttcagaacagtgacattaaggag
agagttgtggatttagaaatcggaagtggtgcgcgcctcttaagtccgcttaatggactg
accatggatcagtttaatgcaatggtacaggagaaagtggacacgctactgtcacagcgc
tcttatgaacacttggctagagtaaggactgtccgggaaacctcaccagactgcaactgc
ccaccaggtccacctggaaaaagaggaagaagaggacgcgacggagacccaggacctcct
ggcacacctggtccaaaaggtgaaaagggcgatcaaggcgatcagggacctcggatggtc
ttccctaagatcaatcatggctttctttctgctgatcagcaactcattaaacgtcggctc
attaagggagatcagggtcaggccggccccccaggacctcccggacctcctggcccccct
ggccccaggggacctccgggagacacaggaaaagacggcccgagaggagttccagggctt
tcaggagaccctggaagtcctggtgagtttggtcaaatgggacctgagggccctccagga
cagatgggtgcaattgggccgccaggtactgatggaataaagggagatatgggtatgaca
ggattagatggaatccctggcgccaagggtgacagaggtgaacggggtgaaaagggagac
atgggagaggatgggccgaaaggtgaatccggagagaagggtgatgccggctcttctgct
gctggcatcaagggtgaaccgggtgagccaggacgaggaggacataagggagagccagga
cttccagggctgcctggactccccgggattaagggtgaacctggtttctatggacctcag
ggtgagcctggactgcccggcctgccaggaacaaagggagagagaggagaaccaggacca
cctggtaagggtgaacggggcgagactggcccagcaggacacaagggagagccgggggaa
ccaggtactctaggccctaaaggttacaagggggacacaggagacaaaggagatttcggc
caagaaggtccacaaggtccacccggagataaaggtgaccagggtacaactgaaatcatt
gactacaatggaaacatccaagaggctcttcagaagataaccactattacagttacgggt
cctccgggaccacccgggccagttggaccaaagggggtaaagggagatcagggtgttcct
ggacttccgggcctggatggagaacggggtcacaaaggctcaaaaggtgacatgggaatt
cctggaatatcaggagaaaagggagcaatgggacttccggggttacagggtttgagtggt
ctgaaaggagacaaaggagatggcggtctgtctggtcctcagggaccttcaatcattggg
ccccccggagcactggggcctcatggaccccctggacccatgggtcctcatggataccct
gggccaaagggggaaccaggggtgcatggtctcaaaggattgcgtggggagcccgggcat
aagggcgacagaggacccctgggtctccccggagcgtctggctcagacggcaagccggga
cccaggggtgtggatggaccagtcggtgcatctggtccagcgggtccaaagggagataga
ggtgagaagggtgatgttggcgatcctggacccagggggccgtatgggttacctggagct
gctggaacaccaggactggatgggttgccaggcttaaagggagacaagggcgtcgagggg
gaaagaggagaaaagggtttccggggcttaaagggtgaaaagggagacccaggtcaacct
ggtttggatgggctggatgccccgtgccaattgggtccagatggacttccaatgccaggc
tgctggcagaagtga
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