Triplophysa dalaica: 130420005
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Entry
130420005 CDS
T09616
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03030
DNA replication
tdw03410
Base excision repair
tdw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130420005 (pole)
03410 Base excision repair
130420005 (pole)
03420 Nucleotide excision repair
130420005 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdw03032
]
130420005 (pole)
03400 DNA repair and recombination proteins [BR:
tdw03400
]
130420005 (pole)
Enzymes [BR:
tdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
130420005 (pole)
DNA replication proteins [BR:
tdw03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
130420005 (pole)
DNA repair and recombination proteins [BR:
tdw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
130420005 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
130420005
NCBI-ProteinID:
XP_056603035
LinkDB
All DBs
Position
4:15269603..15290349
Genome browser
AA seq
2285 aa
AA seq
DB search
MVLQNSGRYKSDRGGDQDNQQDDGSAMSAVKRLERSQFTDTMDERFGFERMKEPGEKTGW
LINMHPTEILDDDRRMISAVDYYFIQEDGNRFKVALPFKPYFYVATKKNCEREVISFLSK
KFQGKVAKLEMIAKEDLDLPNHLVGLKRNYIKLSFNTVDDLVKVKREISPAIRKNREREK
SNDAYTSMLSSALVGGSVVTEDEDGSSKKMTEQLDNIVDMREYDVPYHVRVAIDLKIHVA
HWYNVRYRGSAYPPEIVRREDLVERPDPVVLAFDIETTKLPLKFPDAEMDQIMMMSYMID
GQGFLITNREIVSEDIEDFEFTPKPEYEGPFTIFNEPDEASLIQRWFEHIHETKPNIFVT
YNGDFFDWPFVETRAAHHGLNMHQEIGFQKDNQGEYKATHAIHMDCLRWVKRDSYLPVGS
HNLKAAAKAKLSYDPVELDPEEMCRMANEQPQTLATYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHGNIVFPNKQEQVFNKLTEDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPGAFDFLLQRVERTLRHAIEEEEKIPLEQVTNFNEVCE
EIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGA
NCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHVLNREEQARHERK
RLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSS
AQDKGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGAN
IITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVIKSTNETKPKVTISYPGAILNIMV
KEGFTNHQYQELVDPASLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEESVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAQQTLG
AGETPDIEDFGAPQRPLQPAILISTKRKRISQGEDSQTESQDQELTQSWREILGPPPAIG
SSREELLVWLRYHKKKWELQIRQRKERRKRRRLMAGESQPTGGGVIRDGPTTGLGSFLRR
TARSILDMPWQIVQIAETNHPGLYKLWAVIGSDLHCMKLNITRVFYVNQRVPKQDEAATC
KKVNRILPRSSVSYFLYQYTVPEDMYQEHINEINAELSAPDIEGVYETQVPLLFRALVQL
GCMCMVNKQVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALFG
LFIPSQRKASVFVLDTVRSNQMPNLSTLYGTERTALLEKTTEDLLPPEKHLFEVRAENDI
KSIYRALQRILLNYKEERRGPTLIAVQSNWDLRRLASGLAVLEEFPVVPVHVIDEISYNV
LDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPQDISIFGSDLFLARHLRKHN
HLLWLSPTARPDLGGKEADDSRLVMESDERASMEINSQGCYSTVCVELDIQSLAVNTILQ
SQHVNDMEGGASMGVSFDVIQHASLEEMMSGNQGANMVASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLGS
SVIYGNFNRLLLCTKKRSINDAIAYVEYITNSIHSREIFHSLSITFSRCWEFLLWMDPAN
YGGVKGKLPSSLHYGEDGNEKTKKKDEAKEEGSEDEEDEENRGEDEEQDGDVDDVEDLIE
SNWNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMRQELRRNAPGATPIKRRGGSQVFQQP
TGDVSALPGLITFSQEYVSSELTQNFFTITQKIQKKVSSTRSVTLPSEMFPVLPGSHLPL
NNPALEFIKYVCQVLSLDSNIVIQMNKLKRDLLRLVDVGEFSEDAQFRDPCKSYILPEVI
CHHCNFCRDLDLCKDPAVAQDGSVLPQWFCSNCQAQYETESIEMALVEALQKKLMSYALQ
DLECAKCKGVKEANMPLYCSCAGDFQLAFTTKSFTEQVDVFRNIAAHYNMNFLLETIDWV
LSMNS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtggacggtataaatcagaccgaggaggggatcaggacaaccag
caggatgatggatctgccatgtccgctgtcaaacggctggagcgcagtcagttcaccgat
acgatggacgagcgcttcggctttgagcggatgaaagagcccggggagaagactggctgg
ttgatcaacatgcacccgactgagatcctggatgatgacaggagaatgatcagtgcggtg
gactactacttcatacaggaggatggaaacagatttaaggttgcccttccctttaagcca
tatttctatgtagctactaaaaagaactgtgagagggaggttatctcctttttgtcaaag
aagttccaagggaaagtggcaaagcttgaaatgattgccaaagaagacttagatctgccg
aaccatcttgtgggactaaagaggaactacattaaactttctttcaacacggtggatgac
cttgttaaagttaaaagagaaatctcgccagccatccgtaagaacagggagagagagaag
tccaatgatgcctataccagcatgttatccagcgctctggttggtgggagtgttgtgacg
gaggatgaggatggttcatcgaagaagatgactgaacagctcgacaacatcgtagacatg
cgggaatatgatgtgccttatcacgttcgtgtggccattgaccttaagattcatgtggct
cactggtataatgtgcggtacagaggaagtgcttatccacctgagattgtgcggagggaa
gatcttgtagaaagacctgatccagtggtgttggcatttgatattgagacaaccaagctt
cccctaaagtttcctgatgctgaaatggaccagatcatgatgatgtcatacatgatagac
ggacagggcttcctcatcacaaaccgagaaattgtctcggaggacattgaggattttgag
ttcaccccaaaacctgagtacgaaggccccttcactatattcaatgagcccgatgaggcc
tctctcatccagagatggtttgaacacatccatgagaccaagcccaacatctttgtcaca
tacaatggagacttctttgactggccgtttgtggagacccgtgcagctcaccatggcctg
aatatgcatcaagagatcggtttccagaaggacaatcagggggagtataaagccacccat
gccattcatatggactgcctcaggtgggtaaagagagacagttacctgcctgtaggaagt
cataatttgaaggctgctgcgaaagcaaagttaagctatgaccctgttgagctggaccca
gaggagatgtgccgtatggccaatgaacaaccacagactctggccacctactctgtgtcc
gacgctgtggccacatactacctttacatgaaatatgttcaccccttcatttttgctctt
tgcaccattattcctatggaacctgatgaggttttgcgtaaaggttccggtaccttgtgt
gaagccctgctgatggttcaggcattccacggcaacatcgtcttcccaaacaaacaggag
caggtgtttaacaaactgacagaagacggtcacgttctcgactctgagacatacgtgggc
ggccacgtagaggctctggaatcgggagtgttccgcagtgacatcccctgccgctttaaa
atgaatccaggggcgtttgacttcttgcttcagagggtggagagaactcttcgccatgcg
atcgaggaagaggagaaaattccactcgagcaggtcaccaacttcaatgaggtgtgtgag
gagataaagaagaagctgatatctctgaaggaagtgccgaacagaatcgagtgtcctctt
atttaccatctggatgtgggggccatgtatcccaacatcatccttaccaacagactacag
ccctccgcgatggtggatgaagccacctgcgccgcttgtgattttaataagccgggtgca
aactgtcagcgcagaatggcgtggcagtggaggggcgagatcatgccggcgagtcggagt
gagtttcatcgcattcagcaacaactggagtctgagaaatttccacctcttttccctaac
ggacctcctcgagcgttccacgtgctcaaccgagaggaacaggcgcggcatgagaggaaa
cgattgggagactactgtaggaaagcttacaaaaaagttcatctgaccagactggaggag
agagtcactaccatctgtcagagagagaactcgttttatgtcgacacggttcgagctttc
agagatcggcgatacgagttcaaaggcctccacaaggtatggaagaagaagctgtcttca
gctcaggataaaggggatgcggcagaggtcaagcgctgtaagaacatggagattctctat
gagtctctacagctggcacacaagtgcatcctcaactccttctacggatacgtcatgaga
aaaggggctcggtggtactcgatggagatggcaggtatagtgtgtttcactggagccaac
atcatcacccaggccagagagctcatcgagcagatcgggaggcctctggagctggacact
gatggcatctggtgcgttcttcccaacaccttccctgagaactttgtcatcaagtctaca
aacgaaacgaaacctaaagtgaccatcagttacccaggagccattcttaatatcatggtc
aaggaaggcttcaccaatcatcaatatcaggagctggtggacccagcatctctaacatac
gagaccagagctgagaacagcattttctttgaggttgatgggccgtacctggctatgatc
ctacctgcctccaaagaggaaggcaagaagctgaagaagaggtacgcagtgtttaatgag
gatggatctctggcagagctgaagggttttgaggtgaagagaagaggtgaacttcaactc
atcaagatcttccagtcttcagtgttcgaggcatttctgaaaggcacaacattagaagag
gtttacgcctctgtggctaaagtggccgactactggctcgacgtgctttacagcaaggct
gctaacatgccggacgccgagctgttcgagctcatttcggaaaaccgctccatgtcacgt
aaactggaagattacggagaacagaaatcgacgtccatcagcacggccaaacgtctcgcg
gagttcctcggagatcagatggttaaagacgccggtctcagctgtcgatatgtcatttcc
cgtaagccggaggggtcacctgtcaccgagagggcgatccctctggccattttccaggca
gaggaaagtgttaaaaagcatttccttcgcaaatggctgaagatgccaagccttcatgat
cttgacatcagatctattctggactggagttactacattgagcggttgggtagtgccatt
cagaagatcatcactattcctgcagctctacaacaggtgaaaaatcccgtacccagagtc
cgccatccagactggcttcataagaagcttctggaaaagaacgacatctacaaacagaag
aaaataagcgagctatttaccagtgaaggaaaaagacaggtggcccaacaaactctcgga
gcaggtgagactcctgatattgaggattttggggctccccagcgccccctgcagcccgcc
atactcatcagcactaagaggaagaggatttcacagggagaggacagccagactgagtca
caagaccaggagctcactcagtcttggagagaaatactcggaccaccgccggcaattggt
agcagtcgggaggaacttctggtctggctgcgctaccataagaaaaaatgggagttgcag
attcgccagaggaaggaacgtaggaagcgacggcgtttgatggccggggaatctcagcca
accggaggtggagtcatccgtgatggaccgacaactgggctcggcagcttcctacggagg
accgcccgcagtatactagacatgccctggcagattgttcagattgcagagaccaatcac
ccaggactttataaattgtgggcggtaatcggcagcgacctgcattgcatgaaactcaac
atcacacgagtgttttatgtcaatcaaagagtgccaaagcaagatgaggctgctacctgc
aaaaaggtgaacaggatacttcctcgctcgagtgtgtcttatttcctgtaccagtacaca
gttcctgaggacatgtaccaggaacacatcaatgagatcaatgctgaactctccgctcct
gatatcgagggtgtatatgagacacaggttccactgctgttccgggctctggtccagctg
ggctgcatgtgtatggtcaacaaacaggtggtcagagacctggctggcagagaagcggac
acatttgacctggaacatctagagatgagatctttggcccagttcagctaccttgagcca
gggagcgtaaggcacatttacctgtaccatcacagtcagggtcataaagctttgtttgga
ctcttcataccctcccaacgcaaagccagcgtgtttgtcctagatacggtacgcagtaat
cagatgccaaacctgagcacgctgtacggcacagaacgcacagcactgctggagaagacc
accgaggaccttctgccccctgaaaaacatctgttcgaagtccgtgctgaaaacgacatc
aaatcgatttatcgtgctctacagcgtattctgctcaactataaggaggagcgccgtgga
ccgactctcatcgccgttcagtctaactgggatctccggcgtctggcttccggcttggcg
gtcctggaggagtttcctgtggtgccggttcacgttattgacgagatcagctataacgtt
ctggactggcagcgtcacggggctcgtcgcatgattaaacactacctcaatctggacagc
tgcctgtcacaggcttttgatatggccaggtattatcacttacctgtcggaaacctgcct
caagacatttctatatttggatcggatctatttctcgcgcgtcacttgagaaagcacaat
cacctgctgtggctgtcgcctacggcgcggccggacctcggggggaaggaggctgacgac
agcagactggtgatggagagtgatgagagagcatccatggagatcaacagccagggctgc
tactccacagtttgcgtggagttagatattcagagcttagcggtcaacaccattctacag
tcccagcatgtgaacgacatggagggcggggccagcatgggcgtcagctttgatgtcatt
cagcatgcgtcactggaggaaatgatgtcagggaatcagggggcaaacatggtcgccagc
tacgacgagaccgcactctgctccaacacattcaggattcttaagagcatggttgtcgga
tgggttcgagagatcacgcagtatcacaatgtttacgccgacaatcaggtgatgcatttt
taccgctggctgagatctcccagttcacttctgtatgacccggcacttcatcgtactctt
ctcaacatgatgaagaagatcttcttacagctcgtggcagagtttaagcgtctggggtca
tcggtgatctacggtaatttcaaccggctcctcctctgcaccaagaaacgaagcattaat
gacgccatcgcatacgtggagtacatcactaacagcatacactcacgggagatcttccac
tctctgtccatcacattctcacgttgttgggaattcctgctgtggatggacccagcgaac
tacggaggagtgaagggaaaactaccctctagccttcactatggcgaggatgggaatgaa
aagacgaaaaagaaagacgaagcaaaggaggagggaagcgaggatgaggaggatgaagaa
aacagaggtgaagatgaagaacaggacggtgatgtggatgatgtcgaagacctgattgaa
agtaactggaacatcatgcagtaccttcctcagacagcatcctgtcagaagtacttcctc
atgatcgtctcagcctatatcgctgctgtatatcacagcatgaggcaagaacttcggagg
aacgcccctggtgccacgcccataaagaggcggggcgggtcccaggtattccagcagccc
actggggatgtcagcgcacttcctggtttgatcacattttcccaggagtacgtgtcaagt
gaactgacgcagaacttcttcaccatcactcagaagattcagaagaaggtgtcgagcacc
cgcagtgtgacgctgccatccgagatgtttcccgttcttcccggttctcacctgcccctc
aataacccggcgctggagttcatcaagtacgtatgtcaggtgctttctctggactccaac
atcgtcattcagatgaacaaactgaagcgtgatctgctgcgattggttgatgttggtgaa
ttctcagaggacgctcagttccgtgacccctgcaagtcttacatcctgcctgaggtcatc
tgccatcactgtaacttctgtcgtgacctcgacctctgcaaagaccctgcggtggcccag
gatggttcagttcttcctcagtggttttgttcgaactgccaagctcagtatgaaaccgag
tccatagaaatggccctggtggaggcgttacagaagaaactcatgagttatgcactacaa
gacctggaatgtgccaaatgcaaaggagtgaaagaagcaaacatgcccctgtactgcagc
tgcgctggagacttccaacttgccttcaccacaaagagcttcactgagcaggtagacgtt
ttccggaacatcgccgcccactataacatgaacttcctgctggagaccattgactgggtg
cttagtatgaactcatag
DBGET
integrated database retrieval system
