Triplophysa dalaica: 130420576
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Entry
130420576 CDS
T09616
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130420576 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tdw03000
]
130420576 (cnot4b)
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130420576 (cnot4b)
04121 Ubiquitin system [BR:
tdw04121
]
130420576 (cnot4b)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130420576 (cnot4b)
Transcription factors [BR:
tdw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130420576 (cnot4b)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130420576 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130420576 (cnot4b)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130420576 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
zf-UDP
Torus
DZR_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
130420576
NCBI-ProteinID:
XP_056603923
LinkDB
All DBs
Position
5:complement(5389989..5409852)
Genome browser
AA seq
791 aa
AA seq
DB search
MSHSPEGKDDHMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQSERKQKITENRKHLSSVRVVQRNLVFVVGLSQRI
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKANPNFLQNSTGSGEKSKSKSGSSQSNNKEAWPSLQTTGKIPNGIPDHYKTPSLD
GGSDSEIPDGSETELGLASIIGLPSFTSNCEPFSTSNKSSDYIGLSNGQTQEISGNDSPS
PPPGLSKPSLAVPICLAGMSVRSPFDGAAGVSQSLFSDNSNFRHPNPIPSGLPGFPSSLH
NNPDWPTTPEPQSLFTSETIPVSSSTDWQAAFGFGSSTKQQDDDLGFDPFDVTRKALADI
IENELHVQDKTSFPTTLAPGFPHGPFLGTLHNAASKNPLHPPTSSHFPPNSSMPSRGFSQ
APHRTFYNSFSFPGQTPTSRHSWMGLPVRNNHPHLNHTAALSSAGQHNSFLDLSLASQQQ
QHHSTGLGGIAITENSNSAESLNVKEWQDGLRALLPNININFGGLPCSSSSSSSSSSSSS
CVNHTGGITHSLSWNGTASWMDPAIITGKGIPGPNSLDSLQDDNPPHWLKSLQALTEMDM
PSSSIVPPQPPHSAPFGGPFPHRANWAPYPTTAPANPATQFHSPPPGFQNAFRASAQTAT
DLLQSAGMDRH
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgagggcaaggacgaccacatggagtgcccactttgcatggaacca
ttggagattgacgatgtcaacttcttcccctgcacctgcggctatcagatctgccgcttc
tgttggcatcgaatacgcacagatgagaacggcctatgtccggcctgcagaaagccctat
ccagaagaccctgcagtatacaaacctctctctcaagaggagcttcagaggataaagaac
gagaagaagcagaagcagagcgagcggaagcagaagatcacagagaaccgcaaacaccta
tccagcgtgcgtgtggtccaaaggaacctggtgtttgtggtgggcctgtcacagagaatc
gctgaccccgaggtcttaaaaaggccagaatactttgggaagttcgggaagatccacaag
gtggtcatcaataacagcacttcttacgctgggtcccagggtcctagtgccagtgcctat
gtcacttacatcaggtcagaagatgcccttagagctatacaatgtgtaaacaatgttgta
gtagatggcaggacacttaaggcttctttaggaacaacgaaatactgcagttattttcta
aaaagcatgcagtgccctaaaccagactgcatgtaccttcatgaactgggagacgaagcg
gccagtttcacaaaagaggaaatgcaggcagggaaacaccaggaatatgagcagaaactc
ttacaagacctctacaaagcaaaccccaactttctgcagaactccacagggtcaggagag
aagtccaaaagcaaatcgggctcatcgcagagtaacaacaaagaagcatggccgtcatta
caaactacagggaagatacccaatgggattccagatcactataagactccatctctagat
ggtggttcagactccgaaattccagacgggtcagaaacagagctgggcctcgcctcaatc
atcggcctgccctccttcacatcaaactgtgagcctttcagcacaagtaataaatcttca
gactacatcggtttaagtaatggacagacacaagaaatttctggcaacgactctccatcg
ccccctcctggcctgagtaaaccatctctagcagtgcctatctgtttagcagggatgtca
gtgcggtctcccttcgatggagcagcaggcgtgtcacagtcgctcttttcagacaacagt
aactttcggcatcctaatccaatccctagcggcctgcccggctttcccagttcccttcac
aacaacccagactggcccactaccccagaaccacagagcctcttcacctcagagaccata
ccagtatcatcatccacagactggcaagcggcgttcggctttggctcttcgaccaagcaa
caggacgatgaccttggttttgaccccttcgacgtcacccgcaaagcacttgctgacatc
atagagaatgagctccatgtgcaagacaaaacctcctttcccacaacgttggcaccaggc
ttcccccatgggcctttcctcggcactctacacaatgccgcctccaaaaacccacttcat
ccccccacgtcctcgcacttccccccgaactccagcatgccctcaagaggcttctcccag
gccccacaccgtactttctacaactcctttagctttcccggtcagacgccaacctcccgt
cacagttggatgggcttgcctgtacgcaataaccacccgcacttgaatcacaccgccgcc
ctctcttctgctgggcagcacaacagctttttggacttgagtttggcatcacaacagcag
caacatcacagtacggggctcggaggtattgctatcacagagaatagcaactcggcagaa
agtcttaatgtgaaggaatggcaggatgggctcagagcgcttttacccaacatcaacatt
aatttcggcgggctgccctgttcctcctcttcctcgtcttcatcatcctcctcctcctcc
tgcgtgaaccacacaggcggtatcactcacagcctcagctggaacggcacagccagctgg
atggaccctgccatcatcacaggtaagggtatccctggacctaacagtctggactctctg
caggatgacaatcctccacactggctcaaatccttgcaggcactcacagagatggacatg
ccttccagctcaatcgtgcctccccagcccccacacagcgcccccttcggaggcccgttc
ccccacagagccaactgggccccttatccaaccacagcccctgccaaccccgccactcag
tttcactcacctccaccaggcttccaaaatgccttcagagcctcggcccagaccgctaca
gatctgctacagagtgccggcatggaccgccattaa
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