Triplophysa dalaica: 130421020
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Entry
130421020 CDS
T09616
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tdw03000
]
130421020 (sox5)
Transcription factors [BR:
tdw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130421020 (sox5)
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
AAA_23
Motif
Other DBs
NCBI-GeneID:
130421020
NCBI-ProteinID:
XP_056604633
EnsemblRapid:
ENSTDLG00000006352
LinkDB
All DBs
Position
5:complement(7700231..7863055)
Genome browser
AA seq
795 aa
AA seq
DB search
MDTWDLPLRYTIEADARTEAFQYNKRTDHFKRHKHTFTLSAGGMKTAEAGDRMSSKRPAS
PYGGTDGEVVMATSRQRLDDEEVDGHAVIHLPLSSYCSKVSPRSPRLLDSPPTLNTNMDQ
DGSKGLALSPYTQHNSSTSPSKHQQEEGSMRPGSEPSSASTLGTPERRKGSLADVVDTLK
QRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFGEIKGTPDSLAEKERQLMGMIT
QLSSLREQLLAANEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQ
QIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNYKPGCSDPYPLQLIPTTMAA
AASPGLGALQLQQLYAAQLAAMQVSPGAKHSTMPQANLATGTHSPTSGQSEKNRNTPPPK
PKDEGAQPLNLSSKPKASERKSPCSPASPQVPSVKLGSGSLKNSAPSSIGGPPSRLSSID
LLSSITSAGYLNDHEAVTKAFQEARQMKEQLKREQQVLDAKVAAVNSLSLNNGRSEKEKA
ALESLSQQLKQSEESKFTHAMMDFGDSDGSPSVSDSRIYREARGRGNAEPHIKRPMNAFM
VWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYK
YKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQAQLPLSSAGVVYPGALSMA
GMPSPQMPSEHSSMSSSPEPAPPTSQPSYLSTHKGVVPRVKEEDLRMEDGNGDAYDDFDY
EDDDYGSDSENHIAH
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggacacgtgggacctgcctttgcgatatacgattgaagcagacgcaaggacagaagcc
tttcagtacaacaaacggactgaccatttcaagagacacaaacacacgttcacgctgtct
gctggaggaatgaagacagctgaagctggagacaggatgtcttccaagcgaccagcctct
ccatatgggggaacagatggagaggtagtcatggcgacgagcagacagcgattggacgat
gaagaagttgacggacatgctgtcattcacttgcccctgagttcgtactgcagcaaagtg
tccccgcgatccccccgattgctcgacagccccccaacactaaacactaatatggatcag
gacggcagtaaaggcctggccttgagcccatacacccagcacaactcatctacctcaccc
agtaagcatcagcaggaggaagggtccatgcggccggggagcgaacccagctctgcttca
actctgggaaccccggagagacgcaaaggcagcctggccgacgtggtggacacgctcaaa
cagcgcaagatggaagaactgatcaaaaacgagccagaggaggcccccagcattgaaagg
ctgttgtctaaagactggaaggataagctattggccatgggttctggcaactttggagag
atcaaaggcaccccggacagcctggcggagaaggaacggcagctgatgggaatgatcacg
cagctcagcagcctccgagagcagcttttggccgccaatgaggagcagaagaaactggcc
gcttcgcagatcgaaaagcagcgccagcaaatggagctggcaaaacagcaacaggaccag
attgcgcgacaacagcagcaacttctgcagcaacaacacaaaatcaacctcctgcagcaa
cagatccagcaggtccagggtcagttgcctccgctgatgataccagtgtttcctcccgat
cagagaactctggcggccgctgcggcccaacaaggatttctacttcctcccgggttcaac
tacaaaccaggctgcagtgacccctaccccctacagctgatccctacgactatggcagct
gccgcgtcgcctggactcggcgcccttcagctgcagcagttgtatgcggctcagttggct
gccatgcaggtgtctccgggggccaaacacagcacaatgcctcaggccaacctggcaacc
ggcacacactcgcccaccagcggccagagcgagaaaaacagaaacaccccaccaccaaag
cccaaggacgagggtgctcagcccttgaatctgtcgtccaagcctaaggcatccgagaga
aagtcaccctgctcccccgcttccccacaggtcccctccgtgaagctgggctccggatcc
ctgaagaacagtgccccctccagtatcggaggacctccgtccagactgagctccatagac
ctgctgtcatccatcacctccgctgggtacctgaatgaccatgaggctgtgaccaaagcc
ttccaggaggctcgacagatgaaggagcagttgaagagagagcagcaggtcctggacgcc
aaggtggcggcagtcaacagcctgagcctcaacaacggacgttcagaaaaggaaaaagcc
gctcttgagagcctcagccagcagttaaaacagtccgaagagagtaagttcactcacgct
atgatggactttggcgattcggatggaagccccagtgtgtcagactcacggatctacaga
gaggctcgggggcgtggcaacgccgaaccgcatatcaagcgtcccatgaacgccttcatg
gtttgggctaaagacgagaggagaaagatcctccaggctttcccggatatgcataactct
aacatcagcaagatcctcggatctcgttggaagtctatgaccaacctggaaaagcagcca
tactacgaagaacaggctcgtctcagtaaacagcacctcgagaaatacccggactacaaa
tacaagccgcggcccaaacgcacctgcctggtggacgggaagaaactgcgcatcggtgaa
tataaagctattatgcgcaaccgcagacaggaaatgcgccagtacttcaccgtagggcag
caggcccagttgcccttgtcctcagcgggcgtcgtgtaccctggcgcactatccatggca
ggaatgccctccccgcagatgccctccgagcactcaagcatgtccagtagccccgaacca
gctccgcccaccagccagccgtcttacctcagcacccacaaaggggtggtgccccgcgtg
aaggaggaggatctccgaatggaggacggaaatggcgacgcctacgacgacttcgactac
gaagacgacgactacggcagcgacagcgaaaatcacatcgctcactaa
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