Triplophysa dalaica: 130421033
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Entry
130421033 CDS
T09616
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130421033 (pdzrn4)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130421033 (pdzrn4)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130421033 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ_6
PDZ
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
130421033
NCBI-ProteinID:
XP_056604660
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All DBs
Position
5:6209027..6233693
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AA seq
798 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREYSKSGHDGTVEAMRKDPIVVQVLRRGQASRNQ
SSLQEVCVVDVCTQTDITFEHIMALAKMRPSTPPVPDICPFLLSDSCHSIQTVDHEYFDC
PEYVSSTQAEVERADEFECEEVELCRMNSQEKLGLTLCYRTDEDEDAAIFVGQVEPNSLA
ARDGRIKEGDRILQINGHDVQDKEEAVALLSNDNSRSIVLLVTRPEGQMDGSWLDEDHHD
FLEELKMEILEGKKKEGIYQTVSRMKQSKRLEEQSTDTATCSSGIPEKDSGVKCSFEEDS
EHELSHSQTRTQHQLLERWEAGSRLVPMDTMSFGRQEPGQDGMMSENGVECDQFQQLLEL
KCQIRNGGECGLVYRRSSTIECSLTDQGGSGVARELHMLNEELRNIERECQSIMQAHQLR
RSKHDSPRTDKENRLRRCKLADINEHPERLQWEKLRDKDSSSAYNTAESSRSTPLGTEGS
PDLSVHRRVHLTNQKNLRSTQNVQSPYNSQYNSPILSFPSQSSSAYTRAHTYTSSTPPLQ
TPMTSPGSQGPCQAFSSSLEQSPSNPSESDPALPADDEHCERNRSRASATRHYPSPYHSN
TAPTQTPGTRHYQSYLQLLQQHSTSSLEYSQSQLSLLSLRGRPGPAQSGRVEWKVKVRAD
GTRYVARRPARDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARARE
QRRRREFMQRSRLECLKETVGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGA
RAPEGTKVHNAFLSVTTV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgggttgcaacctgtgtacgctgcagaagagagaggaacattacaagctgctgtatgag
atcgcacaggtaaatgggcgtgaatattccaagtcaggacatgacgggacggtggaagcc
atgcggaaagaccctattgtagtgcaggttctgaggcgaggccaagcgtcccgaaaccag
agcagcttacaggaagtgtgtgtggtggatgtatgcactcagacggacatcaccttcgag
cacatcatggctctggcaaagatgagacccagtacccctcctgtgcccgacatctgcccc
ttcctgctgtctgacagctgtcattccattcagacggtggatcatgaatattttgattgt
ccagagtatgtctccagcactcaggcagaagtggaaagggcagacgaatttgaatgtgag
gaggtcgagctctgtcgaatgaacagccaggaaaaacttggtctcactctctgttaccgc
accgatgaggacgaagatgcagccatttttgttggccaggttgagcccaacagcctagcc
gcaagggatggacgcatcaaagagggcgacagaattttacagataaacgggcatgacgtg
caggacaaggaagaggctgttgctctactctcaaatgataattccagatccatagtattg
cttgtcaccagacctgaaggacagatggatggaagctggcttgatgaggaccatcatgat
ttcctagaggaactgaaaatggagattctagaggggaagaaaaaagaaggaatttatcaa
acagttagtcgcatgaagcagtctaaaagactagaggaacaatctacagatacagcaacc
tgctcctcgggcattcctgaaaaggacagtggtgtgaaatgcagctttgaggaggactct
gaacatgaactttctcattcccaaacaagaactcaacatcaacttctggaaaggtgggag
gcaggctcgcgtttggttcctatggacaccatgagctttggcaggcaggagccaggtcag
gatggaatgatgagtgagaacggagttgaatgcgaccagtttcaacaactcctggagctc
aagtgccagatccgtaatggcggggaatgtggtttggtctacagacgaagcagcactatc
gaatgcagcctgacagaccaaggtgggagcggtgtggcacgggagctgcacatgctcaac
gaggagcttcgcaacattgaacgagagtgtcagagcatcatgcaagctcaccagctccgt
aggagcaaacacgactcacccaggacagacaaggagaaccgcctgcggcgttgcaagctt
gcagatataaatgagcatcctgaaagacttcaatgggagaagctgcgagataaagatagt
tctagtgcctataacacggcggaaagctctcgctcaacaccgctgggaacagaggggtcg
cctgacctctcggttcaccgtcgtgtccacttgaccaatcagaagaacctgcgaagcacc
caaaacgtacagagcccatacaatagccagtacaatagccccattttgtcatttcccagc
caaagtagctctgcttatactcgtgcccatacgtacaccagctcaacacctcccttacag
accccgatgaccagtcctggttcacagggtccatgccaggctttctccagcagcctggag
caaagccccagcaacccctcagaatctgacccagcactcccagcagatgacgaacattgt
gaaaggaaccgcagccgagcctcagccacccggcactacccatcgccctaccacagcaac
acggcaccaacccagacccctggaacacggcactaccagagctacctacagctcctacag
caacattccacttcttctctagagtactcccagagccagctcagccttctcagcctccgt
ggacggcccggtcccgcacaatctggccgggtggaatggaaggttaaagttcgggcagat
ggaactaggtacgttgcacgccggcccgcaagagaccgtattctacgtgagcgagccctg
cggatccgcgaggaacgtagcggggggatgactacagatgacgacgcagtcagcgaattg
aagatgggtcggtattggagcaaggaagaacgcaagcagcagctagcacgtgcgagagag
cagcgacgcaggagggagttcatgcagaggagcaggctggagtgtcttaaggagactgtg
gggaccgcgagcggggaggtgagcatcctggaactcagccataagaagatgctgaagaaa
cgaaacaagaagatcctagacaattggatgacaattcaagagctaatgagccatggggca
cgagcacctgagggtaccaaagtgcacaatgccttcctctcggttaccaccgtttag
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integrated database retrieval system
