Triplophysa dalaica: 130424452
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Entry
130424452 CDS
T09616
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130424452 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130424452 (ddx3xb)
03041 Spliceosome [BR:
tdw03041
]
130424452 (ddx3xb)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130424452 (ddx3xb)
Enzymes [BR:
tdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130424452 (ddx3xb)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130424452 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
130424452 (ddx3xb)
Spliceosome [BR:
tdw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130424452 (ddx3xb)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130424452 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130424452
NCBI-ProteinID:
XP_056606095
LinkDB
All DBs
Position
6:26434787..26444525
Genome browser
AA seq
720 aa
AA seq
DB search
MSHVAVDNVHGLDQQLADLDLNSADLQGVTGRRYIPPHLRNRETSKSDSPGGWDNGRSNG
FANGFHEGRDNRMNGSNSFGGRGSMRGDRGGRGAFRGKPSGSGNPIQPMQNAGFGYDNKD
ATGWNTPKDNAYNSFGGRSDRGKSSSFNDRGSSRGRYERGGFGGGGNSRWQEDSRDEEDW
SKPLARNERLENELFAGGNTGINFEKYDDIPVEATGQNCPPHIDSFHDVEMGEIIMSNIS
LTRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIFSDGPGDALLAVKN
SAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSHVRPCVVYGGADIGQQIRD
LERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPP
KGLRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL
DLLNATVMPSEVQDNTAENIEKPGKESLTLVFVETKKGADSLEDFLYREGYGCTSIHGDR
SQRDREEALQQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV
GNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSSRGRSKRFSGGF
GARDYRQTASSGSTGAFVSRGGRNTGGHGGNRGFGGGGFGNFYNSDGYGGNYSQVDWWGN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgataatgtacacggtctagatcagcagctcgctgacctagac
ttgaattccgctgatcttcaaggtgtcaccggaaggcgttacattccacctcatctaagg
aacagagaaacttccaaaagtgattctcctggaggatgggataacggtcgcagtaatgga
tttgcgaatggattccatgaaggtcgtgacaatcgcatgaatggcagcaacagttttgga
ggacgcggttcaatgcgcggtgaccgtggaggacggggagccttcagaggaaaacccagt
ggctccggtaatcctatccagccaatgcagaacgcaggatttggctacgacaacaaggat
gccactggatggaacaccccaaaagacaatgcctacaacagctttggtggacgctctgac
aggggaaagtcttcctccttcaatgacagagggtcttccagaggacggtatgagcgtgga
ggatttggtggcggtggcaacagccgatggcaggaggactctagggatgaggaagactgg
tccaaaccgttggcccgtaatgagcgtctggaaaatgagctctttgcaggaggcaacact
ggaattaactttgagaagtatgatgacattccagttgaagccacaggccaaaactgtcct
cctcatattgatagtttccatgatgtagagatgggagagatcattatgagcaatataagc
ctgacccgctacacgcgcccgacccctgtccagaaacacgctattccaatcatcaagtct
aagagagacctgatggcttgtgctcagacaggctctggtaaaactgcagcgttcctgttg
ccagtgttgagtcagatattcagtgatggtccaggagatgcgctgctggcagtgaagaac
agtgcccaggaaaatgggaagtatggtcgtcgtaagcagtatcccatttcactggttcta
gccccaacaagagaacttgccctccagatctatgacgaggctaggaagtttgcctatcgc
tctcatgtgcgtccttgtgtggtgtatggtggagctgatatcggtcagcagattcgtgat
ttggagagaggctgtcacctgctggtggccacacctggtcgtctggtggatatgatggag
aggggcaaaatcggtctggactactgcaattacttggtgctggatgaagcagacagaatg
ctggatatgggatttgagccacagattcgtcgtattgtggagcaggacaccatgcctcct
aaagggctgcgtcagaccatgatgtttagtgccaccttcccaaaggagatccagatcttg
gcgcgtgacttcctggaggagtacatcttcttggctgtaggaagagttggatccacttct
gaaaacatcacccagaaggtggtgtgggttgaagaaaatgacaagagatccttcctgctc
gacctgttaaatgccacagtcatgccaagtgaggttcaggacaacacagcagagaacata
gaaaaacctgggaaagagtcgctcacgttggtgtttgtggagaccaagaagggagcagac
tctcttgaggacttcttgtatcgtgaaggctacggctgtacgagtatccacggtgaccgt
tcccagagagaccgcgaggaagcgctccaacagttccgttcgggtagatgcccaatctta
gtcgccactgctgtggctgctcgtggtctggacatctccaatgtaaaacacgtgattaat
tttgacctgcccagtgatattgaggaatatgttcaccgcattgggcgtaccggacgtgtg
ggcaaccttggtctggccacctcattctttaatgataagaacagcaacatcaccaaggat
ttgctggacatcttggtggaggccaaacaggaggtaccatcctggctggagagcctggcc
tatgagcaccagcataagagcagcagccgtggacgatccaagaggttctctggtgggttt
ggtgccagggattaccgtcagaccgccagcagcggcagcactggagcctttgttagtcgc
ggtggtcgtaacacagggggccatgggggaaaccgtggatttggtggtggtggctttggg
aatttctacaacagcgatggctacggtggaaactattcccaggtggactggtggggaaac
taa
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