Triplophysa dalaica: 130424461
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Entry
130424461 CDS
T09616
Symbol
col18a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tdw04147
]
130424461 (col18a1b)
00535 Proteoglycans [BR:
tdw00535
]
130424461 (col18a1b)
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130424461 (col18a1b)
Exosome [BR:
tdw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130424461 (col18a1b)
Proteoglycans [BR:
tdw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130424461 (col18a1b)
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130424461 (col18a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
130424461
NCBI-ProteinID:
XP_056606112
LinkDB
All DBs
Position
6:complement(7507407..7533072)
Genome browser
AA seq
1566 aa
AA seq
DB search
MRFRQGLSLLLILYVAPFDAWLWNSPVVTKAPDVEEDISGSKEENIAGVGAEIIDVASGI
KELVKNWDQKPNVNEAGSVRTPGISEKLGHIKKGNAKSLSEGVKHEIDAGASGSGSGQTF
DLAQEGRATNLTGMWVNDSSLSIFSSPALPKDSSTCLQRGSDWPFCLSHGAGTFSVPNFF
NHTRSEDVAAVMNEWGWLLRSGCHHGLEWFFCLLLAPRCHQPSERFGVALLPCRTFCEVL
LDSCWTVLQERGLPLACHTLPERPDPSQPCFTVSNDKEESGISLPQLIGDTPPHIPRVLG
PNGQTAYVFDKDTNSRQIARAHLPSTFYRDFSIVFHLKPTSDDAGVIFSITDSIQQIMYV
GVKLSAVKDGKRKVIFYYTEPDSDESREVASFEVPHQPDKWSRFSLGVNLDQLSFYGDCD
SAPKVVKFERSSDEMKIEEDTGIFVGQGGTADPDKFQGLISELRVVGNPRVAARHCDEAD
DDYDDDYDYGSGGSGSGMVDTKEKEYHAASVLQPLPPPPVSTMNRKPKLDIDDHQKETGV
SDTTGNKGQRERRGTKKTWVLKGQRMTCQLVRLHSLAQAEPVEKRVDTAGSEYPGPKGDR
GPPGPPGPPGPQGPLTELVDTGDKKVVKMQGPMGPSGPPGPEGPSGPRGPQGKSGDPGKE
GKPGSEGPHGFPGTPGPKGQKGEKGEGQPGPRGLPGPPGPSILDRNAFVDMEGSGLLPGV
CGPPGPPGPPGPPGPGVESEFNGATASPQLNGGPGHAGSPGRPGAPGPPGPPGQKGDCGK
VGLPGITGEEQSSSSAFTSFFANWFPSWETSGAQGSQGSTGISGKEGLPGLPGSMGPQGH
PGPPGPPGPAIRITADGEEKEIALNYIPGIMGLPGPQGPQGIPGLPGKAGFPGLSGQKGD
EGLRGREGIPGLDGFPGRIGLKGERGWKGDKGERGPLGGPPGPPGPPGPTGQMNCSICTE
GGHGIPGPQGPDGIPGQAGFPGPMGPKGDRGVLGPQGASVKGEKGEPGLILDSSGNPVYI
GGQAGQLGRAGPPGPKGEIGIPGRPGRPGLNGKKGGKGDSGIGGGYGYGQPGPPGPPGPP
GPPGSVGRYNGYDDSSSRITYAVKGEKGERGASGIPGLPGLTATFDIHAFKKELKGEAGH
KGEKGEPAGGFHDHYGGAQGTPGRPGPPGPRGESIRGPPGPPGPPGTGYDGRPGSPGPPG
PPGAPGSSLPGIRIPGPPGPPGPPGLLSGVLILRTFDAMAPTTRQHREGTLIYVKDNREL
YMRVDDGVRQVMLGEYKPFPRDLDNPAAVHYTYDYPTLSPQQAPPPPEAQYPVLPDPGFQ
PPHDTRYQGQIEPTDPRHSDPRYFPSAGTVYQGYPDPRRHPHSSHPQPDSRYHTTHHHRP
AVQELPSHTHTAGPALHLIALNSPQTGDMLGIKGVDHQCFLQAQAIGLKGTFRAFLSSRL
QDLHSIVRKDDRDQLHVVNLKDEALFSDWESIFSDSEGRITDDTRIYSFDGRDVLNDDAW
PEKMVWHGSTTRGQRQTDSYCETWRTSSSAVTGMASSLQDGYLLQQSPRSCXSSFIMLCI
ENTYIA
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcaggcagggcttgtccctcctgttgattctttatgtggcaccttttgatgcc
tggttgtggaacagtcctgttgtgacaaaggccccagacgtggaagaagacatttctgga
agtaaggaggagaacattgctggcgtcggagcggaaatcattgatgttgccagcggcatc
aaggaacttgtaaagaactgggaccagaagccaaatgtgaatgaggcgggatcagtgagg
acacctggcatctccgagaagcttggccatatcaaaaagggtaatgctaagtctttatct
gagggagtaaaacatgaaatagatgctggtgccagtggatcaggctcagggcaaactttt
gatttggctcaggaaggcagagcgaccaaccttacgggaatgtgggtcaatgacagcagt
ttaagcatatttagctcccctgctcttcctaaggactccagtacctgtttacagagaggt
tctgattggcctttctgtttatcccatggtgcaggcacattttctgtccctaattttttt
aaccacacccgatcagaggatgtggctgctgtaatgaatgaatggggttggctcctgcga
tcaggctgccaccatggtttggaatggtttttttgcttactgttggcaccaagatgccat
cagccttctgaaagattcggggtagccttgctgccctgcaggactttttgtgaggtgctg
ctggacagctgctggacagtcctacaggagaggggcctgcctttggcctgccacaccctc
cccgaaagaccagatcccagtcagccatgctttaccgttagtaacgacaaagaagaaagt
ggaatttctctgccgcaacttattggggacacaccaccacacatcccccgggtgctcggc
ccaaatggtcaaaccgcatatgtttttgataaggacaccaattcaaggcagatagcacga
gcccaccttcccagtaccttttatcgagacttctcaattgtcttccacttgaagcccact
tctgacgatgccggggtgatcttctccatcaccgattccatccaacagatcatgtatgta
ggggtcaagctctcggctgtgaaggacggcaaaaggaaagttattttttattacacggag
cctgattcggatgaatctagagaggtggccagcttcgaggtgccacaccagcctgataag
tggagccgtttctctttgggtgttaacctggatcagttgtctttctatggggactgcgat
tctgcccccaaagtggtcaagtttgagcgctcatctgatgaaatgaagattgaggaagac
actggcatctttgtgggacagggtgggactgctgacccggacaaatttcagggtctgatc
tcagagttgcgggtggttggtaacccaagggttgctgcgcgtcattgtgatgaagcagat
gacgattatgatgatgattatgattatggttcagggggcagtggaagtggaatggtggac
acaaaagagaaagaataccacgcagcctcagttttgcagcccctgcctccaccacctgtt
tctacgatgaaccgcaagccaaagcttgacatagatgatcatcagaaagagacgggtgtc
tctgatactacgggaaataaaggacaaagggaaagaagggggaccaagaagacctgggtc
ttaaagggccaaaggatgacttgtcagctagtgagactacattctctagcacaggcggaa
cccgtagagaaaagagttgatacagctgggtctgaatatcctggccctaaaggtgatcgt
ggacctccagggcctcctgggcctcctggaccccagggtccgttaacagaattggtagac
accggggacaaaaaagtggtgaagatgcagggtccaatgggcccatctggaccaccagga
ccagagggtccgtccggtccccgcggcccccaggggaaatcaggtgatccaggaaaggag
ggcaaacctggctctgaaggacctcatggttttccaggaacacctggacctaaagggcag
aagggagagaaaggtgaaggacaaccaggcccaagaggtctacctgggccacctggacca
tccatcttagacagaaatgcctttgtggatatggaaggttcggggttgctgccgggtgtt
tgtggtcctcccggcccacctggacctcctgggcccccaggacctggtgtagaatcagaa
tttaatggagctactgcttcccctcaactaaatggaggccctgggcatgctgggtctcca
ggtcgacctggtgctcctggccctccaggacccccaggacaaaagggagactgtggtaag
gttggcttgcctggaattacaggggaagagcaaagctcctcctccgcttttacttctttt
ttcgccaattggttcccttcctgggagactagtggggcacagggttcacagggttctaca
ggaatctcagggaaggaagggctacctgggctccctggatctatggggcctcagggacat
ccaggacctcctggacccccggggccagccatccgaattactgcggatggagaagaaaaa
gaaattgctcttaattatattccaggcatcatggggttaccaggtccacagggacctcag
ggcatacctggacttccgggcaaggctggtttcccaggtctctcaggtcagaaaggtgat
gaagggctaagaggacgagaaggaatcccagggttagatggattccctggacgaatagga
ctaaagggagaaagaggatggaaaggtgataaaggtgagcgtggtcctttgggaggacct
cctggaccaccagggccaccaggtcctacaggacaaatgaactgtagtatttgcactgag
gggggtcatggaatccctggaccacaaggtccagatggaatacctggtcaggcaggattc
ccaggaccaatgggaccaaaaggtgacaggggagtacttggaccacaaggagcctctgtc
aagggtgagaagggtgagcctggcctgatccttgactctagcggtaaccccgtttacatt
ggtggacaagctggacagttgggacgagctgggccacctggaccaaaaggtgaaatagga
attccaggtagaccaggtcgaccaggcctgaatggtaaaaaaggggggaaaggcgattca
ggcatcggtggaggatatggttatggtcaaccgggaccccctgggcctcccgggcctcct
ggacctccaggttccgtgggaagatacaatggttatgatgacagcagctcaaggattacc
tatgctgtcaaaggagaaaagggtgaacgtggagcttctggcatccctggcttgccaggt
ctcactgccacctttgacattcatgcatttaagaaggagttgaaaggggaggcgggtcat
aaaggagagaagggagaaccggcgggaggttttcatgaccattacggtggcgctcagggt
acacctggaagacctggaccaccgggaccaagaggagaatctattcgtggacctcctggg
ccccctgggccccctggaacgggttatgatggacgcccaggtagtcctggaccgccaggt
ccacctggggccccaggatcatctttgccaggaatccgtattccagggccacctgggcct
cccggaccccctggactcttatctggggttttgattttaaggaccttcgacgcgatggct
cctacaactcgccagcatcgagaaggcacgctgatctatgttaaagacaacagagaactt
tatatgagagtagatgacggtgtcagacaagtcatgctaggagaatacaagccttttccg
agggatctggataaccctgctgctgtgcattacacttacgactaccccacattgtctccc
caacaagcccctcctccaccagaagcccagtaccctgtgttacccgatcccggattccag
ccgccacatgacacacgataccaaggacagatagagccaactgatcccagacactccgat
ccacgatacttcccatcagctggtactgtttatcaaggctatcctgatccgagacgccac
cctcacagcagccacccgcaaccagacagcagatatcacactacacaccatcacaggcct
gctgttcaagagcttccatcccacacgcacacagcaggcccggcgctccacttgatcgct
cttaactcacctcaaacgggtgacatgctgggtattaaaggtgtagaccaccagtgtttc
ttacaggcccaagccattgggctcaaaggaacttttagggctttcctgtcttcacggtta
caggatctgcattctattgttcgaaaggatgacagggatcagcttcatgtagtaaatctt
aaagatgaagcattattcagtgattgggagtctatttttagtgactcggagggcagaatt
actgatgacacgcgtatctattcatttgacggtcgagatgttctcaatgatgatgcctgg
cctgagaagatggtatggcatggatcaactactcgcggtcaaaggcagacggacagttac
tgtgagacgtggagaaccagtagttctgccgtcaccggcatggcttcctctctccaagat
ggttacctgcttcagcagtcaccgcgcagctgcngcagctcttttatcatgctgtgcatt
gaaaacacctacattgcttag
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integrated database retrieval system
