Triplophysa dalaica: 130424474
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Entry
130424474 CDS
T09616
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
tdw
Triplophysa dalaica
Pathway
tdw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130424474 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdw04131
]
130424474 (tgfbrap1)
Membrane trafficking [BR:
tdw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130424474 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
130424474
NCBI-ProteinID:
XP_056606129
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Position
6:complement(6743778..6756987)
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AA seq
867 aa
AA seq
DB search
MSVKAFELVPAVEREQVMGDKVRINIECIECCGKHLYLGTNDCFIHHFLLEEHTTAKGMP
AYNAQKLLHKFLGLKKPVLELKAASALERLIVLCDSTITVVDMVTLEPVPTGGNKLKGVT
AFCINENPVTGDPFCVEIAVVSARKRAVQICLVYEDRLQVLKEVATPEQPCALSLDGYFI
CLALSTQYMILNYSTAASQDLFPYDCEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVSWSENVIAASVCFPYVVALDEGFVTVHSMLDQQLKQTLPFRDGHLLQDFEGKMVLA
STKAVYILVPLPLDRQIQDLLVSHRVEEALTLTEAAQRNIPKEKYQILYKRILQQAGFIQ
FGQLKFLEAKEHFRKGQLDVRELISLYPLLLPASSTFTRSHPPLHEFADLNHLTQGDKEK
VQRFKRFLISYLHEVRSVESANGFREDVDTALLKLYAETGHDSLLDLLASDNACLLTDCA
PWLEKHLKYFALGLLYHYNGQDSAALQMWVKIVKGDLQDSTRPDLFEYVVDFLSFCSNLD
LVWRHADWALQRDQKIGVQIFTKRPDSEGKRGHLNPDDVIGYLQKHNKALVLYLEHLVLE
KRLKKEKYHTHLAVLYADRVLGLISRPTVTEEQLSAARQKLQHLLKESSLYRVQLLLNKL
QDCELLLPERATLHGKLEEHDKALHILVHQLKDSPAAEEYCSWASVNQDQAYRQNLFHQL
LSVYLDPDVPGGPQTIAAVDLLNRHANVFDAVRVLDLLPEEWSLPLLRPFLCGALRSSVH
AGCTSRVAVGLARAENLQLKHDRLKYRGGPILVSEKKGCKLCHNTFSEPDCACLPGGTPV
HIHCVTKKALVIPVERQQENAHHSNHT
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaagctttcgagcttgttcccgccgtggagcgggaacaggtgatgggcgac
aaggtgcgaattaacattgaatgcattgaatgctgtggtaaacacctgtatttgggcacc
aacgactgcttcatacatcacttcctactagaggagcacacaacagccaagggcatgccg
gcatacaacgcccagaagctcctacataaattccttggcttaaaaaagccggtgttggag
ctgaaagctgcctctgctttagaacgtctcattgttctttgtgattcaaccatcactgtt
gtggacatggttacccttgaacctgtgcccactggaggaaataaactgaaaggtgtgact
gcgttttgtattaatgagaacccggtgacgggagacccgttctgcgtagaaatagcggtg
gtgtcagcacgcaaacgggctgtccagatctgtttggtctatgaggaccggttacaagtg
ttaaaggaagtagccacaccggagcagccctgcgccctgagcctggatgggtactttatc
tgcctggccctgtccacacagtatatgattctgaactacagcacggcagcatctcaggat
ctttttccgtacgactgtgaagaaaggaaacctatcgttaaaaggatcggccgggaagag
tttctactggctgcccccgggggtctcgggatgtttgctaacgcggagggcatatctcag
cgcgcaccggtgagctggtcagagaacgtgatcgcagcatctgtgtgctttccatatgtg
gttgcgctggacgaaggttttgtgactgttcacagcatgttggaccagcagctcaaacag
acgctccctttcagagatggacacctactgcaagattttgaaggtaagatggtgttggcc
tctacaaaggcagtgtatatactggttcctctccctctggatcgtcagatccaagacctg
ttggtgagccatcgagtcgaggaggccctgactcttacagaggccgcgcagagaaacatt
cccaaggaaaagtatcagattttgtacaaaagaattctccagcaagcaggattcatccaa
tttggccagcttaaatttttagaagcaaaagaacattttaggaaaggacagctggacgtt
cgagaactgatctccctgtatcctcttctcctgcccgcctcttccactttcacgcggagt
catcctccgcttcacgaattcgccgatctaaaccacctaacgcagggtgacaaggagaaa
gttcagcgcttcaaacgcttcctcatcagctatttgcacgaggtgcgcagcgtcgaaagt
gctaacggtttccgagaagatgtggacacggcgctgttgaaactctatgcagagacaggt
catgacagtctactggacttgttggcctcggacaacgcttgccttctgacagactgcgcc
ccctggctggagaaacatctcaagtattttgctcttgggcttctgtatcactacaatggc
caagattctgctgctttacagatgtgggttaagattgtcaagggggatctccaggactca
actcgaccagatctctttgagtatgtcgtagactttcttagtttctgttctaaccttgac
cttgtgtggcggcatgcagattgggcactacagagagatcagaagattggtgtccagatc
ttcaccaaaaggcctgactctgaagggaagagggggcatttaaatccagatgatgtgatt
gggtatttgcagaagcacaataaagcccttgtgctttacctggaacacctggtattagag
aagagattgaagaaagagaagtatcacacccatctggctgtgctgtatgcagacagagtg
ctcgggctgatctcgagaccaaccgtcaccgaggaacaattgtccgctgcccgccagaaa
ctacaacacttactaaaggagtccagtctgtacagagtacagttattattaaataaactt
caggactgcgagctgttactacctgagcgcgctacactacatggaaagttggaggaacat
gataaagccttgcacattctggtgcaccagctgaaagactcgcctgcagctgaggaatac
tgctcctgggcatctgtaaatcaggaccaggcgtaccgtcagaaccttttccaccaactc
ctgagtgtttatctggacccagatgtaccgggaggaccacaaaccatagctgctgtagac
ttgcttaaccggcacgctaacgtttttgatgcggtgcgggtgttggacctcctcccggag
gagtggtctttaccactgctccgcccttttctttgcggggcactgaggtccagcgtgcac
gcagggtgcacttcccgggttgcagtagggctggcccgtgcagaaaacctccagcttaag
catgacaggctgaagtatcgaggtgggccaatattagtgtctgaaaagaagggatgcaag
ctgtgccacaatacctttagtgagccagactgtgcctgcttgcccggcggaacacctgtt
catattcactgtgtcaccaaaaaagccctggtcatacctgtagagcggcagcaagagaat
gcccaccacagcaaccacacatga
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