Triplophysa dalaica: 130424501
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Entry
130424501 CDS
T09616
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like isoform X1
KO
K11757
protein polybromo-1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130424501 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130424501 (pbrm1l)
03036 Chromosome and associated proteins [BR:
tdw03036
]
130424501 (pbrm1l)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130424501 (pbrm1l)
Chromosome and associated proteins [BR:
tdw03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
130424501 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Med3
Motif
Other DBs
NCBI-GeneID:
130424501
NCBI-ProteinID:
XP_056606177
LinkDB
All DBs
Position
6:21642109..21654682
Genome browser
AA seq
1646 aa
AA seq
DB search
MGSKRRRATSPSSSASGGDFDDATSSTPVSGWKRRRASTAPSVDQIAICHELYNTVRDYK
DDQGRQICELFVRAPKRRNQPDYYEVVSQPIDMMKIQQKLRAEEYQDVEQFSADFHLLIN
NAKSYYKTDSAEYRAACRLLNVFQSIKNDLLQGGDGDEAEDDEEGEDGENPSTSMEDETP
PSYLKAILEQLLEAIVSCNDSSGRTVSELFQKLPSKLHYPDYYAVIKEPIDLRAVAQRIQ
AGHYKSINAMAKDVDLLTKNAKTYNEPGSQVFKDANTIKKVFAQRKAEIEQAEPTKSSLR
IRNRRSAQGDRLTAITMALQAGSESDEDSLLSGSVRYDAAETETDSGLSSGDPILLLYQA
VRGARSVSGQLLAEPFLQLPSRREYPDYYQQIKNPVSLQQIREKMKNGDYEGVEQMESDL
SLMFENAKRYNMPNSTVYKRAHRLQQIMQLKKKEIRDEDEGDVSTAVSEPGSGKKKSHKK
NTKKNRMKALYAAVTEAREVGTGRRLCDLFMVKPSKKDYPDYYKIIQEPLDMRTIEHNIR
TERYNNEDALMDDLKLMFRNARHYNEEGSQVYNDANILEKIVKDKQKDLGPAPEEDDMGS
PKLKLRRSGLAASPKKARTQTTPLQQKLTDLYEAVRNFTDNRGRRLSAVFLRLPSRSELP
DYYAAIKRPIDMERIRSYMVQGRYQDIDSLAEDFILMFNNACTYNEPESLIYRDALLLHR
AFLDARRRFEDEEEGEEGTLGAVAVGPLVRELIRNLFVSMMGHQDDEGRCYSDSLAEVPA
VDPADPEDPPLSLEIIRHNLDQGRYRRLDVFQEHVFEVLEKARRLNRTDSEIFEDSVELQ
QFFVKIRDELCKNGEILLSPALSYTSKHLHSDVDQEKREKLPQEMEEDQLKQEEDKKALP
DENKTEGHAGSQWSLDSQSTYSQDCSFENNTYSVGDCVYVQPTEANLRPHIVCIEKLWKD
EAGEQMLYGGWFYRPAETFHLATRKFLEKEVFKSDYYNRVPFSKIMGKCAVLFVKDYFKS
QPEGFKPEDVYVCESRYTARTKTFKKIKVWSIPPSSVKLVPRDVALPVVRVASMFMTTKR
DQDKLLDLPDGDGFIEKEREDVQVEVPNGEPGCQYYEQLRYNDMWLKVGDCVYIRSHRLV
RPRVGRIEKMWVRDEAAFFFGPIFIHPEETEHEPTKMFYKREVFLSNLEETCPMTCISGK
CVVLSFKDFLSCRPTEFADEDVLMFESRYIESEKQMKKFKGLKRFSLSAKVVDDEIFYFR
KPTVPLKEPSPLLNKKIEELEAKFADMEDLDEDMEDLDDDDEEAAATPSMPPSQTSVLND
IDMPYTPPQSTPKIKGMSKKEGAKRKINMSGYILFSSEVRSLIKARHPDYSFGELSRLVG
TEWRNLETTKKAEYEERAAKLVEHQERERVLQQQQQQASPRAGTPVGTMMGVVPPPSTMG
MLNQAMLPVPGMMGNYGSPYMPMQGPPEGMMGMGGTPPHHMGVPLLPSQHYLPPGMAGYP
GMPLPGVMNGMAGSPGPGNPYGMQMVGYGPGQQAPPPYPVQGQPGQHQPTSPIFVAPPPK
PQRLLHSEAYLKYIEGLSADSSTISKWDQSLKAQRKDCRLTREQESRLPTHWLKSKGAHT
TMADALWRLRDLMMRDTLNIRQAFNL
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atggggtccaaaagaaggcgggccacctctccctccagcagtgccagtggaggagacttt
gacgatgctacatcatccaccccggtcagtgggtggaagaggaggagagcatccactgcc
ccttctgttgatcagattgctatttgccatgaattgtacaacactgttagagattacaag
gatgaccagggcagacagatatgtgagctgtttgttcgggcaccaaaaaggaggaaccag
ccagactattatgaggtggtgagtcaacccatagacatgatgaagatacagcagaagctc
agggcagaggagtaccaggatgtagaacaattctcagccgactttcatctgcttattaac
aatgctaaatcgtactataagacagacagcgcagagtatagggcggcctgcaggcttttg
aatgtcttccaatccataaagaacgatctgctacaggggggtgatggagatgaggcagaa
gatgatgaggaaggagaagacggggagaacccaagcacttccatggaggatgagacacca
ccaagctatctgaaagccatattggaacagcttttggaggccattgtgtcatgcaatgat
tcttcaggaaggactgttagtgagctcttccagaaacttccctctaaattgcattaccca
gactactatgccgttataaaggaaccgatagatctccgcgccgtggctcagagaattcag
gcgggtcattacaaatctatcaatgccatggcgaaggacgttgatcttttgaccaaaaat
gccaaaacctacaacgagcccggttcacaggttttcaaggatgcaaacacaattaagaag
gtttttgcccagagaaaagcagagatcgagcaggctgaacccactaaatccagcctccgc
atcagaaatcggaggtctgctcaaggagatcggctcacggccatcaccatggcgcttcag
gcggggtctgaaagtgatgaggactccctgctttcaggctctgtgcgttatgatgctgca
gaaacggagacggactccggtctcagttcaggtgacccaatcctcctgctgtaccaggct
gtgcgtggagccagaagcgtttcggggcagcttcttgccgaaccgtttcttcagctcccc
tcacgcagggaatacccagactactaccaacagatcaaaaaccctgtctccctacagcag
atcagggaaaagatgaagaatggggattatgagggagttgagcagatggagagtgacctc
tcgctcatgtttgagaacgcaaaacgctacaacatgcccaactccaccgtatacaaacgt
gcacatagactgcagcagataatgcagctgaagaaaaaggagattcgggatgaggatgaa
ggagatgtttctactgcagtgtctgaaccaggaagtggtaaaaaaaaaagccataagaaa
aacaccaaaaagaaccgaatgaaggcgttgtatgctgcagtgactgaggcaagagaagtc
ggcaccgggcgacgcctctgtgatctctttatggtaaagccctccaagaaagattatcca
gactactacaaaatcatccaagagccactggacatgcgcaccatcgagcacaacatccgc
acggagcgttataacaacgaggatgcgctcatggatgacttgaagcttatgtttcgcaac
gcccgccattataacgaggaggggtctcaggtttacaatgatgcaaacatcttggaaaag
attgttaaggataaacaaaaggatcttggacctgctccggaggaggatgacatgggctcc
cctaaactgaagcttcgtcgtagtggacttgcagcctccccgaaaaaggcccgcacacag
accacaccgcttcagcaaaagctcactgatctctacgaagctgttcgcaactttacagac
aaccgcgggcgtcgtctcagtgccgtttttctacgcctaccatcacgctctgagctgcct
gactattatgccgccatcaaacggcccatcgacatggagcggatacgcagctacatggta
cagggtcgctaccaagacatcgattctctggcggaagatttcatcctcatgttcaacaat
gcttgcacctacaacgagccagagtctctcatataccgcgatgctttgttgctccatcga
gcttttctagatgcccgtcgacgctttgaggatgaagaggaaggagaagaaggcacgctg
ggcgccgtggcagtcggtcctcttgtgcgtgagctcattcgtaatctctttgtttcgatg
atggggcaccaggatgatgaggggcggtgctacagcgactccttggcggaggtgccggcc
gtggaccctgctgacccagaggaccctccactcagtttagagattattcgccataacctg
gatcaaggacgctaccggagactggatgtgtttcaggagcatgtgtttgaggtgctggag
aaagctagacgcctcaataggactgattctgagatctttgaggattcggtggagcttcag
cagttctttgtgaagattcgtgatgagctgtgcaagaatggtgaaatcttactcagtcca
gcactgagctacacatccaaacatctgcattcagatgtggaccaggagaagcgagagaaa
ctaccccaggagatggaagaagaccaactgaaacaagaggaggataagaaagctcttccg
gatgagaacaaaacagagggacacgcaggaagccagtggtcattggattctcaaagcaca
tacagtcaggactgcagttttgagaacaacacctacagtgtgggagactgtgtatatgtg
cagcctactgaagcaaatttgcgacctcacatcgtgtgtattgagaaactatggaaggac
gaagccggtgagcagatgttgtatggtggctggttttatcgcccagcggagacgttccac
ctcgccacacgtaaattcctggagaaggaggtgtttaagagcgactactataaccgcgtg
cccttcagcaagatcatggggaaatgtgctgtgttgtttgtaaaggattattttaagtcg
caaccagaaggattcaaaccagaagatgtttacgtctgtgagtctcggtacactgccagg
accaaaacctttaagaagatcaaggtgtggtccataccaccaagctctgtgaaactagtc
cctcgagatgttgcgttacccgtggtcagggtggcctccatgttcatgaccactaaacgt
gatcaagacaaattgttggaccttcctgatggagacggttttattgagaaagaacgagaa
gacgtccaagtcgaagtacccaatggggagccgggttgtcagtactatgagcagcttcgc
tacaacgatatgtggctcaaagtgggcgactgtgtctatatacgctcccacaggctagtt
cgccctcgagttggcaggatcgagaagatgtgggtgcgagatgaagcagcgttcttcttc
ggacccatcttcatccaccctgaggagactgaacatgagccaacaaagatgttctacaag
cgtgaagtgttcctcagcaatctggaggaaacctgccctatgacatgtatttcagggaaa
tgcgtggtgttgtctttcaaggatttcctgtcctgcagacccactgagtttgcagacgaa
gatgtgctcatgtttgagagtcgctacattgagagcgaaaagcagatgaagaagtttaaa
ggccttaaacgtttctcactttctgctaaagtggtagatgatgagatcttctacttcaga
aagccaactgtgcctctaaaggagccgtctccccttctgaataaaaagattgaggaactt
gaggccaagtttgcagacatggaggacctagatgaagatatggaagatctggatgatgat
gatgaagaggcagcagcgacgccctcaatgcctccgagtcaaacatctgtattaaatgac
atagatatgccttatacaccaccacagtccacaccaaagataaagggcatgtccaagaaa
gaaggagccaagcgtaagatcaatatgagtggctacatcctgttcagcagtgaggtcagg
tctcttattaaagcccgtcaccccgattactccttcggagagctgagccgactagtgggc
acagaatggaggaacctggaaactactaagaaggcagaatatgaagaacgagctgcaaaa
ctggtggagcatcaagaacgagagagggtccttcagcaacagcagcagcaggcttcccca
agagcaggtactccagtcggcacaatgatgggggtggtacctcccccaagcactatgggg
atgctaaaccaggccatgctacctgtgccaggcatgatgggaaattatggctcgccctac
atgcccatgcagggtcctcctgagggcatgatgggcatgggtggcacaccacctcatcac
atgggggtgcccctcctgccctcccagcactaccttccaccaggcatggccgggtaccct
ggtatgccccttccgggtgtgatgaatggtatggctggaagtcctggtcctggaaaccct
tatggcatgcagatggtgggttatgggcctggacaacaggctccgcctccatatccagtc
caaggtcaaccaggccagcatcagccaacctctcctatttttgttgccccgcctccaaaa
cctcagcgtctgctgcattctgaagcttacctgaaatatatagagggcctcagcgctgat
tcatccactattagcaagtgggaccagagccttaaggcacaaagaaaagactgtcggctc
acccgcgaacaagagagccgtctccctacgcactggctgaagagcaagggtgctcatacc
acgatggcagatgcgttgtggagactccgagacctgatgatgagggacactctcaacatc
cgacaggccttcaacctttaa
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