Triplophysa dalaica: 130424987
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Entry
130424987 CDS
T09616
Symbol
col7a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130424987 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Ig_DSCAM-DSCAML_C
Interfer-bind
DUF4992
Motif
Other DBs
NCBI-GeneID:
130424987
NCBI-ProteinID:
XP_056606993
LinkDB
All DBs
Position
6:13515010..13583884
Genome browser
AA seq
3131 aa
AA seq
DB search
MGWLKQWNLMAAVLLCLPSLSTAQGQCDIVGAADIVFLVDGSSSIGRTNFILVKNFMAGI
VRPFARAVGSDGIRFGAIQYSDTARVEFTFTAYLNGTELITAVENINYKGGNTRTGAGLK
YIADNFFNTASIRDVPKITILITDGKSQDNVLEPAQKLRSLGVKIFAVGIKSADANELKL
IASPPQSEFTSQIGNFKALSSLLPLVSPRVCTTSGGSYSNDESYSGPSDLQIFGETTDSL
RFRWSPAGGSVSGYLVQYRPLSGLSQPIKAELRQETIGSSQLSYIARELRSGTEYQITVI
AQYPNSLGEPVSAKARTKPLPGVTALRLGQASYFTLALAWDPPADPVQGYRITYRPTGQP
AAQLVEQSVGAESSSLTLRDLKADTEYVISLYPLFPRNSVSPATLTARTLRLEGVQQLSV
QTITNNSVRVRWTGVAGARGYRVVWGPFTGSDVETVELRDDSEFTLVNLQPDTEYIVTVI
ALYNGEVEGPPATAPFKIEGSEEQVLRATTSGPTSIRLNWNFIQAARGYRLEWKAGERAR
VQQQDFPQGTTSYELRNLQPSTEYIITLFTLYDGREEATFFSTKPTEQSVGRVTNLRVVE
TLGNIVRLGWTGVSGATQYDIVILNTQSNKEVNRKVSGNQTTVDLQDLEDGVRYTVSVTA
LVGFTKGDPATVYIIAEKPLRVTNLRVVSSNSRRVRISWNGVSGATGYRVTWRQSNSAEQ
FRVLGGDFTSYTIDGLQPDDSVIVGVSPVIDGRVGEAVTVTARTSGSIGTVTGLRVIEYS
SSRILLSWAPVNRVTGYKITWRQSGGVEDFETVAADVTSYAIDRLQEGATYQVSVSGLVN
SREGPAATVTARTDQTTIASVTNLQVLEAQGEVIRVSWVGVQNASSYRILWKRTDGGEER
SQLVGGNVTSVDLRQLDEGVQYEVKVLAVVRNREGPPVSVRITTGGVLPQNIVVEGLRVL
DSTPGGLRITWRPVRGANAYRIYWRSSQGETESSRLISGDATSYTLDGLQPGLSYIIRLS
ALLEGGESKATTIQASTDPLPPVSGLSVTDSTENSVLLGWSPVTGATGYILRWREERDTG
PDQSETRIGTGTSYRVTGLRLGRRYRFTIQPTFQNQIGPESSIEERTVCVGGRLDVVFLV
PATRNRSGLAESVLSMLASAAGSFTLIGPGDSQVGVVVYGEDAKAGFLLNQHSNTVALVE
EILSIPFNNRPGNNIGRAMTFARQFLLSEPAGRRFSVPGVVVIVTDEKSTDDLSQPSAAI
RADGVTVLAVGIGRADPGELRFAVTDGSTQNLLYAQDSNQLYSFQPDLADLLCGLARGTG
VTNGPCTVECPSGPKGEPGRKGERGRDGVDGRKGEPGRDGLPGREGTSGPEGPPGQPGSS
LGLFPKKQVIFVFISQGFPGLDGSSGVPGRPGTPGAVGLPGSQGLPGVRGDSGDPGIAGP
QGLKGEKGERGESGSASGGGLPGRKGEPGIPGIPSTPGRPGVDGRKGEAGERGLPGQDGR
PGIPGTPGLAVKGDKGSSGERGPPGVGSGVAAKGDAGEPGPPGPSGPQGPRALTGAKGAK
GEQGEGTEGKTGPPGPTGDPGDRGPRGPPGEIGTKGDRGQPGAPGLDGAKGDRGLTGPIG
DKGDKGSQAPPGPQGLRGLPGSSGPPGEKGAEGTKGEPGSIQGPGLIGKKGEPGSRGLSG
ADGSKGDKGDAGHKGERGVPGAGEPGQTGPKGDQGDRGLPGLSGKPGAKGSLGDQGERGE
SGSPGSQGPLGPRGKDGLKGDKGEDGIGGEPGLSGKPGERGLRGIPGQPGQPGPKGDIGD
PGEDGRNGTPGSTGQRGSKGEQGIAGPPGPPGDLISGEKQLKGDRGEKGEAGDPGEHGAK
GQKGEAGSAGTVGPSGPEGQRGLPGSRGDPGDRGSPGEKGERGAAGLDGRSGQDGKPGPP
GAPGLRGDPGKQGDPGRDGLVGLRGPQGPPGPLGPSGTDGTPGKAGEDGKAGLPGKAGED
GVPGEDGRKGDKGEPGATGRDGRDGIKGDQGIGGLSGPPGPIGPSGVPGSTGPPGPVVYV
KGQPAPAIPGPQGPPGTPGIPGVPGAAGVRGERGLPGLKGDVGDPGEDGKPGTAVDVKKA
FSEFGIEIRNLKILLDDKSLTEDGTKGDKGDAGPRGPAGADGARGLPGERGLKGEQAEKG
PPGPQGPPGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEVGRPGDKGEKGDKGER
GLAGPAGLPGLVGAPGAKGDAATAQTGLPGPRGLPGPQGVRGEQGPVGPSGPTGERGYTG
ARGEKGEKGGSGEAGKDGSPGNPGEPGKTGQDGKPGFRGPTGPPGLPGNPGEPGIRGPTG
PMGGNGPPGAPGVKGDSGEPGTGVQGPPGPQGIRGLPGSAGTPGAIGPQGPPGLPGQVGE
GGKPGVPGRDGAPGKDGLPGLPGKQGITGSIGPLGLKGEQGDSGPPGPSVVGPPGKKGET
GTPGLTLPGTIGERGLTGLTGAKGDKGPAGIKGDRGATGDPGDPGENGARGPSGPKGVKG
EAGVGMDGPPGQPGPVGLKGDPGLPGSPGAPGPRGSNGTPGLAGQRGEAGQPGPPGLQGE
RGLQGFIGKAGNPGTPGGAGPPGPPGTPGFAGLKGDKGETGVGVPGARGERGDPGPRGEE
GRAGLDGERGPNGSLGTKGNRGDKGDQGPPGIRGEKGETLLVGGPPGDKGIKGETGDRGP
KGAQGDKGAKGQDGPPGEQGLRGEPGERGSNGFQGARGPGGQKGDAGQPGVPGEAGSSGK
DGLHGMRGEKGENGLVGLRGLKGDRGSKGACGSSGPKGDKGDAGIGGRPGLPGRKGGQGE
VGPAGPTGSPGKEGLMGAKGDRGFDGVIGPKGTHGEKGERGPPGIPGSPGARGVDGPAGL
TGPQGPAGGQGPEGLQGHKGERGSPGPAMVGPRGIPGIPGERGEQGETGPDGHKGDRGEP
GMTEDAIRTYVRTEMNQHCGEWLFVLVEVSVFSGIQDVQVPEAVQTYRSRSSASPERSIV
RGDEEGQQLRVVMNTNDPDYEHIYSIETYDDDAPIVDTVDYDTTFNKSQDDILTGETVSA
DSLKAERTKRQVKSEDSCLLPMDEGSCSRYTLRWYFNSEVGACRPFIYSGCGGNANRYLQ
KEECEQHCLSQ
NT seq
9396 nt
NT seq
+upstream
nt +downstream
nt
atggggtggttgaagcaatggaatctgatggctgctgttttgctgtgtctcccctcattg
tctacagctcaaggccagtgcgatattgttggtgcagcagatattgtgttcctggtggat
ggatcatccagtattggccggaccaattttatcttggttaagaatttcatggcagggatt
gtcagaccctttgccagggcggtgggttctgatggcatccgcttcggagccatacagtac
agtgatactgcccgggtggagtttacattcactgcatacctgaatggcactgagcttata
actgctgtagagaatatcaattataaaggtggaaacacccgcactggtgctggcctcaaa
tacattgcagacaacttcttcaacactgcctcaatcagagatgtacccaagataactata
cttattactgatggtaaatctcaggacaatgtactggaacctgctcaaaaactacgtagt
ttaggagtcaagatatttgcagtaggtataaagagtgcagatgcaaatgagctgaaactt
attgcttctcctcctcaaagtgagttcacctcccagattggaaactttaaagctctcagc
tctttgctgcccttagtgtctccacgggtctgtacaacgagtggaggctcttactcaaat
gatgaatcctacagtggtccatcagacttgcagatttttggtgagaccactgattcattg
agattccgatggtcacctgcaggagggagtgtaagtggctatctggttcaatacagaccc
ctttctggcctgagtcagccaatcaaagcagagctccgacaggaaacaataggaagcagc
cagctcagctatattgcacgagagctgcgttcaggcacagaataccagatcaccgttatt
gctcagtaccccaacagcctgggagagccggtgtctgccaaggcccgaacaaagccactc
ccgggtgtgactgccctacgactgggccaagccagctattttactctcgcattggcctgg
gatcccccagccgacccagttcagggctacagaattacatatcgacctacaggtcagcca
gctgcacagctggtggaacagtctgtgggggcggagtcaagttctctgactttgcgcgat
cttaaagcagacacggaatatgtcatcagtttgtaccccctgtttcccagaaacagtgtt
tcaccagctacactgactgcccgcacattacgtttagaaggtgttcagcagctctcggtt
cagacaatcaccaacaacagcgttcgagtccgctggacgggagtagcaggggccagagga
tatagagtcgtctgggggccttttacaggaagtgatgtggagaccgtagagctgagagat
gatagtgaattcactctggtcaatctacagccagacacagaatacattgtaacagtcatc
gccttatacaatggagaagttgaaggacctccggccactgctccctttaaaattgaaggc
tcagaggaacaggttctgagagctacgacttctggacccacaagcatcagattgaactgg
aatttcatacaggccgctagaggttaccggttggaatggaaagctggggagagggccaga
gttcagcagcaggattttccacaaggcaccaccagttatgagctcagaaatctacaaccg
agcacagagtacatcataactctattcacactctatgatgggcgagaggaggccaccttc
ttttctactaaacctacagagcagtcagtcggtcgtgtcacaaacctaagggtggtggag
acattaggaaatattgtgcgcttgggatggacgggggtctctggagcaacacaatatgac
attgtcatactaaatacacaatctaataaagaagtgaacagaaaagtttctggaaatcag
actacagtggacctccaggaccttgaagatggtgtgcgatacactgtcagtgtgactgca
ctagtcggtttcactaaaggagatccggcgactgtgtatatcatagcagaaaaaccactg
agagtgaccaacttgcgtgtggtcagcagcaacagccgacgagtcaggatttcatggaat
ggtgtttccggggcaacaggttaccgggttacttggagacaaagcaacagtgcagagcag
tttcgtgtgctaggtggcgatttcacttcatacactatcgacggactgcagcctgatgac
tccgttattgtgggcgtttccccagtgattgacgggagggttggagaagcggtcactgta
actgctagaactagcggctctatcggaacggttacagggctcagagtcatagaatactca
tcctctagaatacttctatcttgggctcctgtgaatagagtaacaggctacaaaatcact
tggcggcaaagtggcggagtggaagactttgagactgtagctgctgatgtcacttcctat
gccattgatagactccaggaaggtgcaacctaccaagtttccgtctcaggccttgtgaac
tcacgagagggacctgctgccactgtgaccgctagaacagatcagaccactattgcaagt
gtcaccaatttacaggtgctggaggcccagggcgaggtcatccgagtcagctgggttgga
gttcagaatgcatcatcatacagaatactctggaagaggactgatggtggagaggagaga
agtcagctggtcggtggcaatgtgacatcagtggatctgaggcagttagatgagggcgtg
cagtatgaggtgaaggttctggctgtagtccgtaacagagagggcccacctgtgtccgtc
agaattaccacagggggagtgttgccacagaatatagtagtagagggactacgtgtgttg
gattcaacccctggggggctgcgaataacctggagaccagtgaggggagccaacgcatat
cgaatctattggagatcttcacaaggcgagacagaatcaagtcgtctcattagtggtgat
gcaacctcatataccttggatggacttcaacctggtctgtcctacatcataagattgtct
gctttgttggaaggtggcgaatctaaagctaccaccatccaagcatccactgatcccttg
ccacccgtgtcaggtttgagtgtgacggacagcactgagaattctgtgcttttgggctgg
tcacctgtaacgggagccacaggctatattttacgctggagagaggagcgagacacagga
cctgatcaatctgagacacggattggaacaggcacatcttatcgtgtgaccggtctgcgt
ttgggccgccggtaccgcttcactatccagcccaccttccagaaccagattggacctgag
agcagtattgaagagcgcacagtgtgtgttggagggcgtttggacgtggtctttcttgtc
ccggcaactcgcaatcgctctggtctggctgaatctgttttgtcaatgcttgccagtgct
gctggatcattcaccctcattggtcctggagactcccaggtgggggtggtggtgtacggt
gaagatgcaaaagcaggcttcctcctcaatcagcatagcaacaccgtcgcccttgtggaa
gagattctgtccatcccattcaacaacagaccaggaaataatataggccgagcaatgacg
tttgctcgtcagtttctgctgagcgagccggcaggtcggaggtttagcgttcccggggtg
gtcgtcattgtcactgatgagaagtcgacagatgatctgagccagccttctgctgctatt
agagccgatggtgtgacagtgttggcggtaggaattggacgtgcggaccctggagagctg
cgttttgcagtgactgatggcagcactcaaaatctgctctatgcgcaggactcaaatcag
ctctacagtttccaacccgacctggcagacctcctctgtggccttgcacgaggcaccggt
gtcacgaatgggccttgtactgtagagtgtcccagtgggcctaaaggagaacctggacga
aagggtgaaagaggcagagatggagtggatggaagaaaaggcgagcctggtcgtgatggc
ctgcctggtcgtgagggcaccagtggcccagaaggcccaccaggtcaaccaggcagcagt
ctgggtttatttccaaaaaagcaagttatctttgtctttatttctcagggtttcccggga
ttagatggcagttcaggtgttccaggtcgccctggtactcctggtgcagttggacttcca
ggcagtcaggggttaccaggtgttagaggggactcgggagacccaggtatcgcaggccct
cagggtttaaagggagagaaaggtgaaaggggggaatctggatctgctagtggaggaggt
ttaccaggacggaaaggagagccaggaattccagggatcccgagcactcctggaaggcca
ggtgtagatgggagaaagggagaggcaggtgaacgaggtttgcctgggcaggatggtcgg
cctggcataccaggcacccctggacttgctgttaagggagacaaaggcagttctggagag
aggggtcctcccggagtgggcagtggggtagcagctaagggagatgctggtgaacctgga
cccccaggtccatctggtccgcagggcccacgagcactgaccggagccaaaggagccaaa
ggagaacagggagagggtactgagggtaaaacaggccccccaggaccgactggagaccct
ggtgatcggggtcccagaggacctcccggtgaaattggaactaagggtgacagaggacag
cctggtgcacctggtttagatggagccaagggagacagaggcctgactggtccgatagga
gacaagggcgataaaggttcacaagccccccctgggcctcaaggactcaggggtttgcca
gggagcagcggaccccctggagagaagggtgctgaggggaccaaaggggaaccaggaagc
attcagggaccaggtttaatagggaagaaaggagaaccgggttcaagaggcctttcaggt
gctgatggctccaaaggtgataaaggagatgcaggacataagggggaacggggtgtacct
ggagcaggtgagcctggacaaacaggacctaaaggagaccagggggatcggggtctgcct
ggattatctggaaaacccggagcaaaaggcagtctaggtgaccaaggggaaagaggagag
tctggcagtcccggttcacaagggcccctgggaccacgagggaaagatgggcttaaaggt
gacaaaggagaggatgggattggaggagaaccagggttgtcgggtaaaccaggagagcga
ggtctaagaggaatacctggtcaaccaggtcagcctgggccaaagggggacataggtgat
ccaggggaagatggacgaaatggcacaccaggatcaactggacaaagaggctcaaaggga
gaacagggaatagcaggaccccctgggccccctggagatttgataagtggagagaaacaa
cttaaaggtgacagaggggaaaagggggaggcaggtgacccaggggagcatggggctaaa
ggtcagaagggtgaagcaggatcagcaggcactgttggaccaagtggtcccgagggacag
cgtggacttccaggttccagaggtgacccaggcgataggggcagtccaggagaaaaggga
gaaagaggagctgctggcttggatggacgatcaggtcaggatgggaaacctgggccgcct
ggagctcctggattacggggtgacccaggtaaacaaggggatcctggcagagatggcttg
gttggactcagaggacctcaaggacctccaggtccactaggaccttcaggaaccgatggc
acacctggtaaagcaggggaggatggaaaagcaggactgccaggaaaagcaggggaggac
ggcgtgccaggagaagatggtcgcaagggagataaaggagaaccgggagctactggaaga
gatggtcgagatggaataaagggcgatcagggcattggggggctcagtggcccacctggt
cccattggaccttccggggttcccggcagtaccggaccaccagggccggtggtctatgtt
aaagggcagccagctccagctattccaggcccccagggccctccagggacccctgggatc
cctggtgttccaggagctgctggagtgagaggagaaagaggtctgccaggcttgaaagga
gatgtgggggatccaggggaggatggtaaaccggggactgcagtggacgtaaagaaagct
ttttcagaatttggcattgagatcaggaatctgaaaatattgcttgatgacaaaagcttg
acagaggacggaacaaaaggtgataaaggagatgctggacctagaggccctgctggagct
gatggtgcacggggtcttccgggtgaacgaggcctgaaaggagagcaggctgaaaaaggg
ccacctggaccacagggtcccccaggcagggcaattggagaaagaggcccagagggtcca
ccgggacaagcaggtgaacctggaaagccaggaatacctggagtacctggacgagccggt
gaacttggagaagttggcaggcctggggataagggagagaaaggggataaaggagaaaga
ggactagctggtccggctggattacctggtttagtgggggctccaggagcaaagggggat
gctgccaccgctcagactggtttgcctggtccgagggggctccctggacctcaaggcgta
agaggagagcagggtccagttggaccttctggacctactggagaacggggctatactggt
gctcgtggggagaaaggagaaaaaggaggcagtggtgaggccggtaaagacggctcccca
ggaaatccgggtgagccaggaaaaacagggcaggatggaaagccgggtttcaggggaccc
accggtccaccaggcctacctgggaatccaggtgaaccaggaataagaggaccgactggt
cctatgggtggaaatggacccccaggggcacctggtgtgaagggtgactcaggagagcca
ggcactggagtccaaggccctcctggacctcagggcatcagagggttacctggatctgca
ggcactccaggagccataggaccacaaggacctcctgggcttccaggacaagtgggagag
gggggcaaacctggggtcccagggagagatggtgctcctgggaaagatggtctgccaggg
ttacctgggaaacagggaattactggatccattggccctttgggacttaagggagagcaa
ggtgacagcggcccaccaggaccgtctgtcgtcggaccccctggaaagaagggtgagacg
gggactcctggtctgacattgccgggaactattggagaaagaggccttacgggattaacg
ggcgcgaaaggagacaagggtccggcaggtatcaaaggagacagaggagcaacaggtgat
cctggagatcctggggagaatggagcgagaggaccatcagggcctaaaggagtcaaagga
gaggctggtgtggggatggatggacctccaggacagcctggacctgttggattaaagggt
gatcctggccttccaggttctccgggtgctccagggccacgcggttcaaatgggaccccg
ggactggctgggcaaaggggggaagcaggtcagccaggaccccctggactgcaaggagaa
aggggtcttcaaggatttataggcaaagcaggaaaccctggaacaccaggaggtgctgga
ccacctggaccccctggtactccaggttttgcaggactaaagggtgataagggtgaaact
ggtgtaggagtgccaggtgccagaggagagagaggcgacccagggcctcggggagaagaa
ggacgggctggactagatggagaaagaggcccaaatggttctctaggcaccaaaggcaac
agaggagataagggtgatcaaggtcctccaggaattagaggggaaaagggagaaactctg
ctggtggggggtcctccaggggataagggaattaaaggagaaacgggagaccgaggaccc
aaaggtgcgcagggtgacaaaggtgcaaaaggacaggatgggccaccaggtgaacagggt
ctgagaggcgagcctggagagcgaggttccaatggcttccaaggagctcgtggtcctggt
ggtcagaagggggatgcagggcagcctggagtcccaggagaagcgggatcatccggaaaa
gatggcctgcacggcatgagaggagagaagggcgaaaacggcctcgtgggtctgcgaggc
ctcaagggagatcgaggttccaagggggcatgtggatcgagcggaccaaagggcgacaag
ggggatgctgggattggtggcagacctggattgccagggaggaaaggaggacagggtgaa
gttggccctgcaggtccaacaggaagtccggggaaggagggactcatgggagccaagggt
gacagaggctttgatggagtaatagggccaaagggaacacacggagagaaaggtgaaaga
ggcccacctggtatacctgggtctcctggtgcgagaggtgtggatggacccgctggttta
actggccctcaagggcctgctggaggtcaaggtccagagggactgcaggggcataaggga
gaaagaggttctccaggacctgcaatggttggccctcgtggcattcccgggatcccagga
gagagaggagaacagggggagacaggccctgatggacataaaggagacagaggagaacca
ggcatgactgaggatgcgattcggacttatgttagaactgagatgaatcagcattgcggt
gagtggctgttcgttcttgtggaggtaagcgtgttctcaggtattcaggacgttcaggtc
cctgaggcagtgcagacttacagaagtcgctcctccgcgtcccctgagcgctcaattgtc
cgtggggacgaggagggtcaacagctgcgtgttgttatgaacacaaacgacccagactat
gagcacatttactcgatagagacctatgatgatgatgctccaatagtggacactgtcgac
tatgacacaacttttaataaaagtcaggatgatattttgacaggcgaaacagtctctgcg
gattcattaaaagctgaaaggacaaaaagacaagtgaaaagtgaagactcgtgcctcttg
ccgatggatgaggggagctgctctcgctatactctgcgctggtactttaattctgaggtg
ggcgcctgtagaccttttatttacagcggctgtggaggaaatgccaaccgctatttacag
aaagaagagtgtgagcaacactgtctctcacagtaa
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integrated database retrieval system
