Triplophysa dalaica: 130425194
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Entry
130425194 CDS
T09616
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130425194 (pdzrn3b)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130425194 (pdzrn3b)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130425194 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
zf-RING_6
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
130425194
NCBI-ProteinID:
XP_056607287
LinkDB
All DBs
Position
6:complement(20807365..20881265)
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AA seq
1042 aa
AA seq
DB search
MGFELDRFNGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHSRGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLNNHCCLKALRVHNGALQGKVVSLD
KELKKQALKSGKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSLSPSCKGG
ETKNVTVILRRESGSLGFNIVGGRPCTDNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKVTHDQAVEAFRTAKEPIMVQVLRRAPRPKPACPNGDAQLMDISTQTDIT
FQHIMALSKIPASSTPVDVLEQYLMPEGHSAGHEFFDPNDFLEGMQHEIEREELEYEEVD
LYRTNIHDKLGFTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDDGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDSATLLSHHHEKDSGLGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRRLAYSQDTLGSGDLPFSSESFISADYPDADFLGDFPADECERFRELLELKCQVQSSR
SPQQSLFWPAGGVASGGEEGVDKELELLNEELRTIELECLSIVRAHRMQQLREQCREQSW
MLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSL
RRGTENQPEAGASSAANRILKPLLSPVQEACSPSRSTRSTPTKEFDASSQPEIKERKPSR
HSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAHSQMSLASMCRDPVASADLGPKMEWKVKI
RSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAVSELKMGRYWSKEERKQHAVRA
KEQRQRREFMKQSRMDCLKEQGGIIDDKKEVNIIELSNKKMMKKRNKKIFDNWMTIQELL
THGAKSPDGTRVYNSLLSVTTV
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggatcgttttaacggtgccgtggacccggacttcaaatgcaacttg
tgcaataaagttttggaggacccgctcactaccccgtgcggtcacgtcttctgcgccggc
tgcgtgctgccgtgggtcgtgcagcagagcagctgccccgtcaaatgccaacggatctcc
accaaagagctcaaccacgttcttcctctcaaaaacttaatattaaagttagaaatcaaa
tgtgacaatcactcgcggggctgcgagaagatcgtcaagctgcagcatctggcggagcac
gcggagatgtgcgattattcccctgccaaatgtaggaataaaggatgcaacgaggtactg
aaccttaaagatatggatgcacacatgcgcgagtcctgcgattacagagcggtcggtata
tgcgagagcggatgcggattgatgctcacgcacaaggagcaaaagttaaacaaccactgc
tgtttgaaagccctaagagtgcacaacggtgcgctgcaggggaaagtggtcagccttgat
aaggagctgaaaaaacaagcccttaagtcgggtaaaagagagaaatcgctcctggctcag
ctgtcagcggtgcataacgagcttcagatgactgcgctgaaataccagaagaagttcact
gaatacagcgccagaattgactcgctgtccaagagtctttctccgtcgtgtaagggtgga
gagaccaaaaatgtcaccgttattctccgtcgggagtctggatctttaggattcaatatt
gttggaggaagaccatgtacagataataaagatggcacttcaaatgaaggaatctttgtg
tcgaagattgtggagaacggcccggcggacaaggaagggggattgcagatccatgacagg
ataatggaggtcaatggcaaggacctatccaaggtgacacacgaccaggcggtggaggcc
ttccgcactgctaaagaacccatcatggtacaggttctacgtagggcacccaggcccaaa
cccgcatgcccgaacggagacgcacagctaatggacatcagcacccagacggatatcacc
ttccaacatatcatggccctaagcaagatacctgcctcctccacacctgtggatgtcctc
gagcaatacctgatgccagaaggacactctgctggtcatgagttcttcgaccccaatgat
ttcctagagggcatgcagcatgagatagagagagaggagctggaatatgaggaagtggat
ttgtacaggactaatattcatgataagttggggttcaccgtgtgctacagaaccgatgat
gaagatgagaccggaatctatgtcagcgagattgatcccaacagcatcgctgccaaagac
ggacgaatccgtgagggcgatcgaatcatccagatcaatggcattgagatccagaatcgc
gaggaggccgttgctcttttaaccagtgaagaacacccgaatgtctgtctcctgttggct
cggccagagatacagttggatgacggatggatggatgatgacaggaacgattatctagat
gacctccacatggatatgttggagcagcagcatcatcaggctatgcagttcaccgcaagc
atgcttcagcagaaaaaacatgaagaagatggaggtacaacagatagcgcaacgcttcta
tcccaccaccatgagaaggacagcggactgggccgcacggacgacagcactcggaatgac
gagagctctgagcaggagaacttggcagatgaccagaccagcgcctccaccacgctaggc
agccgacgcagactcgcttatagtcaggacaccctgggcagcggtgacttacctttcagc
agcgagtccttcatctccgctgactacccggatgctgacttcctaggtgactttcctgcg
gacgagtgtgagcgatttcgcgagttgctggagctcaagtgccaggtgcagagcagcaga
agcccgcagcagagtttgttttggcctgctgggggcgtggctagcgggggagaggaaggc
gtggacaaagaactggagcttctgaacgaggagcttcgcactatcgagctggagtgcctg
agcatagtaagagcgcaccgtatgcaacagctgcgagagcagtgccgcgaacagtcctgg
atgctgcacaacagcgggttccgcaactacaacaccagcgtggacgccagacgccatgag
ctggccgacattagcgaactcccggagaagtcggataaggacagctccagcgcatacaat
actggagaaagttgccgcagcaccccacttacgctagagctctcccccgataactccctg
cggcgtggaaccgaaaaccagccggaagcaggagcgagtagcgccgccaacagaatttta
aagcccctactgtcacccgtccaagaggcgtgcagccccagcaggagtactcgctcaact
ccgacgaaagagttcgatgcttcaagccagcctgaaatcaaagaacgcaaaccgagccgc
cattcaccctacaagcacgcccacatcccagcacacgcccaacactaccagagctacatg
caactcatccaacaaaagtcagtggagtacgcccatagccagatgagtttggcgagcatg
tgccgggaccctgtcgcgtcggccgacttgggacccaagatggaatggaaggtcaagatc
cgcagtgacgggacgcgttacatcaccaagcgtcctatccgggacaagctcctaaaagag
cgggccctacggatccgagaggagcgcagcggaatgaccacggacgacgatgccgtcagc
gaattgaaaatgggccgctactggagtaaggaggagcgcaagcagcacgccgtcagggcc
aaagagcagcgtcaaaggagggaattcatgaagcagagtcgtatggactgtcttaaggag
caaggtggaatcatagatgataagaaggaagtgaacatcattgaactgagtaacaaaaag
atgatgaaaaagcggaataagaaaatctttgacaactggatgaccatccaagaactgttg
acccacggtgcaaagtctcccgatgggacgcgggtgtacaactcgctattgtcggtgaca
acggtgtag
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