Triplophysa dalaica: 130425557
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Entry
130425557 CDS
T09616
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw04120
Ubiquitin mediated proteolysis
tdw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130425557 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130425557 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdw04121
]
130425557 (mgrn1b)
Enzymes [BR:
tdw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130425557 (mgrn1b)
Ubiquitin system [BR:
tdw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130425557 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130425557
NCBI-ProteinID:
XP_056607766
LinkDB
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Position
7:complement(19225258..19234203)
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AA seq
555 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFAGHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKEDADSPIDEGVKPRALYGV
EFTFDSDARVAITVYCQAFEEFSNGMAIYSPKIPVLVSETVYYKRGVSQQFSLPSFKIDF
SEWKEEDLNFELDRGVFPLVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPPDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRRKPGTLSPVSFSPVLAQSMDHEEHSSSDSIPP
GFEPISLLEALNGHGAVSPGIPSAPLYDEINFSGSLSGESRQLSSPEHSGDSGGQKSKVS
KSPDSLSSDCSTLRSPSSPIQEEDEEKLSEMSDAQAHMLLSSSPAPTEGTAGDDAPDSLS
PEDEDGLNLDEEATNDCSSEHSSLTKTESDPPGDLSLQGLSGSSESLSTQSTCCSSQPLL
GASSHLHMDDEELDV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgattttaagtcgaaggattgcaggtgttgaggatatcgacatccaggctaac
tctgcttacagatatccccccaaatcaggaaattattttgctggccactttttcatgggg
ggagagaagtttgacacccctcatccagagggatatcttttcggggaaaacatggatctc
aactttcttggcaaccgtcctgtgcagtttccctatgttactccagccccacatgagcca
gtcaaaacattgagaagtctggtcaacatcagaaaagactcgttacgattagtcagatac
aaagaggatgctgattctcctatcgatgaaggagtaaaaccgagggccttgtatggagta
gagttcacatttgattcagatgctcgagtggccataacagtctactgtcaggcgtttgag
gagttctcgaatggcatggcaatatacagccctaaaatccctgtactggtctccgagact
gtatattacaaaagaggagttagccagcagtttagtctgccatccttcaagattgatttc
tctgagtggaaggaagaagacttgaactttgaactggacagaggcgtctttcctctggtg
attcaggctgtagttgatgaaggagacgattgtctgggtcatgcgcatgtactgctggca
gcgtttgaaagacacgttgatgggagcttctcagtgaagcctttgaaacagaaacaaata
gtggatcgtgttagttacttattgcaggagatttatgggattgagaacaagaacaatcaa
gagacaaagccgcctgatgatgagaacagcgacaacagcaatgagtgtgtggtgtgtctg
tcggatctacgggacaccctgattttgccctgtaggcacttgtgtctgtgtaactcctgc
gctgacactctacgctaccaggccaacaactgccccatctgtcgcttaccgtttagagcc
cttcttcagatccgagctgttagaaggaaacccggaacactttctcccgtttccttcagc
ccagttctggctcagagcatggaccatgaagagcattcaagttccgactctattcctcct
ggctttgagcccatctctctcctggaggctcttaatgggcacggcgccgtgtcccctggc
atcccgtccgcccccctgtacgatgagatcaacttctctgggagtctgagtggagaaagc
agacagctcagttcacccgagcactctggagacagcggaggacagaagagtaaagtcagc
aagtcgccggatagtctctcatctgactgcagcactctgcgctctccgtcgtctcccatt
caagaggaggatgaagagaaactgtccgagatgtctgacgcacaggctcacatgctgctc
tccagtagccccgcccccactgagggtactgcaggggatgatgctcctgactctctgtct
cctgaagacgaggatggactgaatctagacgaagaagccacgaatgactgtagcagcgag
cacagcagcttgaccaaaactgaaagcgatcctcccggagatctgtccctccagggattg
tcaggttcgtcagaaagtctgagcacccagagcacctgctgctccagtcagccgcttctg
ggggcttcaagtcatttgcacatggatgatgaagaactggatgtttaa
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