Triplophysa dalaica: 130426788
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Entry
130426788 CDS
T09616
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130426788 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130426788 (xab2)
03041 Spliceosome [BR:
tdw03041
]
130426788 (xab2)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130426788 (xab2)
Spliceosome [BR:
tdw03041
]
Complex B
Other components
Prp19-related factors
130426788 (xab2)
Complex C
130426788 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
NRDE-2
ARM_TT21_C
ARM_TT21
ATG1-like_MIT2
TPR_1
Tcf25
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
130426788
NCBI-ProteinID:
XP_056609709
LinkDB
All DBs
Position
7:complement(19804910..19810975)
Genome browser
AA seq
845 aa
AA seq
DB search
MPNLSGKADVIFEEDDLAYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPANEEVNNCHERALVFMHKMPRIWIDYCGFMVSQCK
ITRSRRTFDRALRALPVTQHGRIWPLYLRFGRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRTVGHLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSFNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTFTEAVQTVDTMKATGKPHMLWVSFGRFYEDNEQLDDARTIFEKATKVI
YKQVDDLAAIWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPVKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVESDERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTARFWQNWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQIIKATTGTVSDFDPGQSGLDDMKLLEQKAQLLAKEAEQDKP
KPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDAEDGEPDEVQLEQKSVPTAVFG
GLKED
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccaaatctcagcggaaaagcagacgtgatattcgaagaagatgatttggcttatgaa
gaagagatcatcaggaatccatattcagtcaagtgttggatgcgttacattgagcacaag
cagaatgctcccaagtctgtgctcaatatgatctatgaaagagctttaaaagaactgcct
ggcagttataagttgtggtacaattacctgagagagaggaggaaacaggtgaaaggcaag
tgtgtcacagatccagcgaatgaggaggtcaacaactgtcacgagagagctctagtgttc
atgcacaagatgccacggatatggatcgattactgtgggttcatggtgtctcaatgtaaa
attacacggagcagacggacgtttgatagagcattaagagcgctgcccgtaacccagcat
ggtcggatctggcccctgtatcttcgctttggccgtaacttacctctgccggaaaccgct
atccgcgtttaccgacgttacctgaagttatctcctgagaatgcagaagaatacattgat
tacctacgaacggtcggacatctggatgaagctgcacttcggctggcagctgtcgtcaat
gatgaaaactttgtttctaaagagggaaagtcaaattatcagctctggcacgagctctgc
gacctcatctcacaaaacccagacaaggtgacatcgttcaacgtgggagccattattcga
ggaggtctcactcggtttactgaccagcttggcaagctctggtgttctctggctgattac
tacatccgcagtggccactttgagaaggctcgagacgtatacgaggaagccatcctaacc
gtagtcacggtgcgagatttcacccaggtgttcgacagctatgcacagtttgaggaaagc
atgatcgccgccaaaatggagaccacgtccgaactgggacaggatgaagatgaggacatt
gacctggagttacggttggcacgattcgagcagctgataactcgacgcccgctattgttg
aacagcgtgttgctgcgtcagaatcctcacaatgttcacgagtggcacaagagagttaaa
ctctatgagggtcaaccacgacagataatcaacacgtttaccgaggctgtgcagacagta
gacacaatgaaagccacaggaaagcctcacatgctctgggtttccttcggcagattctat
gaagataatgaacaactggatgatgctcggaccatctttgaaaaggccaccaaggtgatc
tacaaacaggtggatgatcttgctgcaatatggtgcgagtatggtgagatggagctgaga
catgaaaattatgatcaggctctacgcatactaaggaaagcaacagcgattccgtcaagg
aaagcagagtatttcgattcatcggaaccggtgcagaatcgagtgtacaaatcccttaaa
gtctggtccatgcttgcagatttggaggaaagtctgggcacattccagtctacaaaggca
gtgtatgatcgcatcattgatctcaggatcgccacacctcagataattataaactatgcc
atgttccttgaggaacacaactactttgaggacagcttcaaggcatatgagcgtggcatt
gccctctttagatggcctaatgtccatgatatctggaacacatatctcacaaagttcatc
gatcgatatggaggcaagaagctggagagagcacgagatctgtttgagcaagctctggat
gggtgccctgttaaatacgccaaaacgatctacctgctgtatgctaagctggaggaggaa
tacggtcttgcacgtcatgccatggctgtgtatgagagagccacctctgctgtagaatca
gatgagcgccatcaaatgttcaacatctacatcaagcgggcagcagagatttatggggtc
acacacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgtctgcgctttgctgatatggaaagcaaacttggagagattgaccgagcaaga
gccatctattcctactgctctcagatctgtgatccaaggatgactgctcgtttctggcaa
aactggaaagagtttgagattcgccacgggaacgaggacacaatccgtgagatgttgcgt
attaaacgcagtgtgcaggccacttataacacacaggtcaacttcatgtccgctcagatc
ataaaggccactactggaacagtgtcagatttcgatccagggcagagcggtttggatgac
atgaagttgttggagcagaaggctcagctgctggcgaaagaggccgagcaggacaaaccc
aaacctaaagacaagatccttttcgtcaggagtgacacctctcgcagcgagctggccgaa
ctggccaaacaagccaatccagatgagattgacattgatgatgatgatgaggatgcggag
gatggagaacccgatgaggtccagctagagcagaagtctgtccctaccgctgtcttcgga
ggactaaaggaggactga
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